This website uses cookies to ensure you get the best experience on our website.
- Table of Contents
Plan chromogenic SFRP1 IHC on paraffin sections with the catalog antibody at 0.5–1 μg/mL (datasheet A01968-2). Assess extracellular staining and compare high signal in testis pachytene spermatocytes with adipocytes where staining was not detected (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Extracellular positivity in several tissues (HPA tissue IHC) | |
| Staining pattern | Extracellular signal; high in testis pachytene spermatocytes (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A01968-2) | |
| Positive control | Testis | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A01968-2) | |
| Caveat | Secreted protein: staining may differ from RNA location (HPA tissue IHC) | |
| Regulation | Specific expression regulation unreported (UniProt) | |
| Isoform / epitope | No isoforms listed; map epitopes to mature chain 32–314 (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet: A01968-2) is accompanied by three published SFRP1 IHC methods (PMC2361362; PMC7565692; PMC4342152).
| Sample | Paraffin-embedded human colon cancer tissue; fixative not specified (datasheet A01968-2) |
| Fixation | Image fixative and duration unreported (datasheet A01968-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet A01968-2) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01968-2) |
| Primary antibody | Rabbit anti-SFRP1, 0.5-1μg/ml (datasheet A01968-2) |
| Primary incubation | Overnight at 4 °C (datasheet A01968-2) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A01968-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | SFRP1-positive staining in pachytene spermatocytes of testis (HPA tissue IHC: High). HPA tissue profile: extracellular positivity in several tissues. No signal in the no-primary control. |
SFRP1 is secreted and can remain at the cell surface or in extracellular matrix; it has no transmembrane segment (UniProt Q8N474: location and topology). In tissue IHC, expect extracellular positivity in several tissues and high staining associated with pachytene spermatocytes in testis (HPA: tissue IHC). HPA rates the tissue staining Approved and cautions that RNA and protein locations may differ for a secreted protein (HPA: tissue IHC).
| Extracellular staining, with high staining associated with pachytene spermatocytes in testis (HPA: tissue IHC). | This fits the reported tissue pattern (HPA: tissue IHC). Cell-associated signal is plausible because secreted SFRP1 may remain cell-surface-associated; score the stained compartment and cells separately (UniProt Q8N474: location; standard IHC practice). |
| Strong, isolated nuclear staining with no corresponding extracellular pattern (standard IHC practice). | Treat this as a discordant result requiring investigation: UniProt places SFRP1 outside the cell or at its surface and lists no transmembrane segment (UniProt Q8N474: location and topology). Check antibody controls and detection background before assigning nuclear localisation (standard IHC practice). |
| Prominent signal in adipocytes or respiratory epithelial cells (HPA: tissue IHC comparison). | HPA reports SFRP1 as not detected in adipocytes of adipose tissue and respiratory epithelial cells of bronchus (HPA: tissue IHC). In those sampled contexts, investigate cross-reactivity or endogenous detection activity; an unexpected stain alone does not establish either cause (standard IHC practice). |
| Diffuse chromogen across cells and surrounding tissue, obscuring compartment boundaries (standard IHC practice). | The pattern cannot reliably distinguish the extracellular signal HPA reports from nonspecific background (HPA: tissue IHC; standard IHC practice). Compare the no-primary control and inspect whether signal follows tissue structure before scoring SFRP1 (standard IHC practice). |
| No staining associated with pachytene spermatocytes in testis (HPA: tissue IHC comparison). | This conflicts with HPA's high staining observation for those cells, but a single negative section does not prove target absence (HPA: tissue IHC; standard IHC practice). Confirm that the relevant cells are present and review the staining controls and run conditions (standard IHC practice). |
| Secretion and surface association (UniProt Q8N474: location and topology). | SFRP1 can appear outside cells, in extracellular matrix, or at the cell surface despite lacking a transmembrane segment; do not require a crisp membrane rim to recognise a plausible pattern (UniProt Q8N474: location and topology). |
| Processing and epitope position (UniProt Q8N474: processing). | The signal peptide occupies residues 1–31, while the mature chain is 32–314 (UniProt Q8N474: processing). If an antibody's epitope becomes known, compare its position with that boundary; no epitope is supplied here (UniProt Q8N474: processing; supplied antibody record). |
| Tissue context and secreted protein (HPA: tissue IHC; UniProt Q8N474: location). | HPA reports extracellular positivity in several tissues and high staining in testicular pachytene spermatocytes, while its sampled adipocytes and bronchial respiratory epithelium are not detected (HPA: tissue IHC). Compare like cells and compartments, not whole-section darkness (standard IHC practice). |
| Evidence level for the staining pattern (HPA: tissue IHC and antibody record). | The tissue IHC reliability is Approved, and CAB008116 is listed as IHC Approved (HPA: tissue IHC and antibody record). This record does not claim an Enhanced pattern or provide an ICC-IF validation result (HPA: antibody record). |
| Situation | Likely cause | Next action |
|---|---|---|
| The expected testis signal is absent (HPA: tissue IHC comparison). | The relevant pachytene spermatocytes may be missing from the examined area, or the IHC run may have failed; the image alone cannot distinguish these possibilities (standard IHC practice). | Locate the relevant cells on the counterstained section, check the run's positive control, then review antibody dilution, retrieval and detection as general IHC variables (standard IHC practice). |
| Extracellular signal is lost in widespread haze (HPA: tissue IHC comparison). | Background from antibody binding or detection can obscure the reported extracellular pattern; no SFRP1-specific cause is established by this appearance (HPA: tissue IHC; standard IHC practice). | Inspect a no-primary control, then review blocking, washing, antibody concentration and chromogen development as general IHC variables (standard IHC practice). |
| Signal is chiefly nuclear (standard IHC practice). | That compartment disagrees with SFRP1's secreted, cell-surface or extracellular location; artefact or cross-reactivity should be considered, but is not proven (UniProt Q8N474: location; standard IHC practice). | Compare compartment-specific signal with controls and the HPA extracellular pattern before reporting nuclear SFRP1 (HPA: tissue IHC; standard IHC practice). |
| Adipocytes or bronchial respiratory epithelial cells stain strongly (HPA: tissue IHC comparison). | These sampled cell types are reported not detected by HPA; cross-reactivity or endogenous detection activity is possible, while context differences remain possible (HPA: tissue IHC; standard IHC practice). | Check the no-primary and detection controls, identify the stained cell type, and report the discrepancy with the HPA reference rather than assuming specificity (HPA: tissue IHC; standard IHC practice). |
| Staining varies between sections (standard IHC practice). | Cell composition and routine IHC processing can differ between sections; the supplied sources do not establish SFRP1-specific fixation sensitivity (standard IHC practice; HPA: tissue IHC; UniProt Q8N474). | Compare matching tissue regions and controls, then review section handling and run conditions without attributing variation to a documented SFRP1 fixation effect (standard IHC practice). |
| Can this IHC pattern establish an expected ICC-IF localisation? (HPA: subcellular and antibody records). | HPA supplies no main ICC-IF location or cell-line images, and the listed antibody has no ICC validation entry (HPA: subcellular and antibody records). | Use the separate IF/ICC guide for assay design; treat any fluorescent compartment assignment as provisional until supported by IF controls (HPA: subcellular and antibody records; standard IF practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — At least one protein variant secreted, tissue location of RNA and protein might differ and correlation is complex.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Testis | Pachytene spermatocytes | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
Troubleshooting SFRP1 staining in paraffin section IHC requires attention to retrieval, extracellular localisation, and controls that distinguish specific signal from tissue background.
Anti-SFRP1 image captions show paraffin-section IHC in human colon and lung cancers and mouse intestine and kidney, plus IF/ICC in U20S cells (catalog image captions).
A01968-2 will render with its own human colon cancer paraffin-section IHC figure; other captions show human lung cancer and mouse intestine and kidney IHC, plus U20S cell IF/ICC (catalog image captions). M01968 is listed for human IHC and ICC/IF but has no IHC or IF image caption, so it has no figure card here (catalog applications, reactivity and image alts).
Which to pick: Choose A01968-2 for tissue IHC: its pictured human colon cancer paraffin section used citrate retrieval at pH 6 for 20 minutes and 1 μg/ml primary antibody; the fixative is unreported (A01968-2 IHC image caption). For IF/ICC, A01968-2 has a pictured U20S cell example at 2 μg/ml, while M01968 lists ICC/IF for human samples without a supplied image (A01968-2 IF image caption; M01968 catalog applications, reactivity and image alts). Choose A01968-2 for cross-species work because it lists human, mouse and rat reactivity and has pictured human and mouse paraffin-section IHC; M01968 is a rabbit monoclonal listed for human reactivity only (catalog reactivity and clone; A01968-2 IHC image captions).