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- Table of Contents
Plan chromogenic SNAP23 IHC in paraffin sections using the catalog antibody’s documented IHC-P conditions (datasheet A02487-1). Compare membranous staining in HPA-supported positive and negative cell populations, and account for unresolved isoform coverage (HPA tissue IHC; UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Membranous staining in several tissues (HPA tissue IHC) | |
| Staining pattern | Membranous; high at fallopian tube cilia tips (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A02487-1) | |
| Positive control | Fallopian tube+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Staining varies by cell type; myocytes are undetected (HPA tissue IHC) | |
| Regulation | Low tissue specificity (HPA tissue RNA) | |
| Isoform / epitope | 2 isoforms; epitope coverage is unspecified (UniProt) |
The catalog antibody uses heat-mediated EDTA retrieval at pH 8.0 (datasheet: A02487-1); the published mouse lung protocol uses citrate at pH 6.0 (PMC4613665).
| Sample | Paraffin-embedded human lymphoma tissue; fixative not specified (datasheet A02487-1) |
| Fixation | Image fixative and duration unreported (datasheet A02487-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A02487-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A02487-1) |
| Primary antibody | Rabbit anti-SNAP23, 2-5 μg/ml (datasheet A02487-1) |
| Primary incubation | Overnight at 4 °C (datasheet A02487-1) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A02487-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | SNAP23-positive staining in ciliated cells (tip of cilia) of fallopian tube (HPA tissue IHC: High). HPA tissue profile: Membranous expression in several tissues. No signal in the no-primary control. |
SNAP23 is a cell membrane protein with no transmembrane segment (UniProt O00161: subcellular location and topology). In paraffin-section IHC, expect predominantly membranous staining in several tissues, including ciliated cells of the fallopian tube and glandular cells in selected organs (HPA: tissue IHC). Use those patterns as guides: HPA rates the tissue staining Approved, with medium consistency between antibody staining and RNA expression (HPA: reliability).
| Membranous signal in fallopian tube ciliated cells, strongest at ciliary tips (HPA: High in fallopian tube ciliated cells). | This matches the most intense supplied tissue-IHC example; assess the ciliated cells and their tips separately from neighboring cells (HPA: tissue IHC). |
| Moderate membranous staining in adrenal, breast, cervical or duodenal glandular cells (HPA: Medium in those cells; membranous tissue profile). | This is compatible with the reported pattern. Compare staining within the relevant cell type; HPA's level describes its observed IHC result, not a required score for every specimen (HPA: tissue IHC). |
| Predominantly nuclear staining, without a convincing membrane pattern (UniProt O00161: cell membrane; HPA: membranous tissue profile). | Treat this as a suspect compartment pattern and check the control and detection steps before calling it SNAP23; the supplied sources do not support nuclear localization (UniProt O00161; HPA: tissue IHC). |
| Strong color in cells HPA lists as undetected, such as adipocytes or cardiomyocytes (HPA: Not detected in those cells). | Investigate antibody cross-reactivity or endogenous chromogenic activity (general IHC practice). Score the named cells rather than the whole tissue; an undetected HPA result is not proof that every specimen must be negative (HPA: tissue IHC). |
| Diffuse color across cells and tissue spaces, with poor membrane definition (HPA: membranous tissue profile). | This favors background over an interpretable SNAP23 pattern. Review blocking, antibody concentration, washing and chromogen development alongside controls (general IHC practice). |
| Compartment and topology (UniProt O00161: cell membrane; no transmembrane segment). | Interpret membrane-associated staining as the expected pattern; absence of a transmembrane segment does not make a nuclear pattern expected (UniProt O00161; HPA: membranous tissue profile). |
| Cell and tissue choice (HPA: High in fallopian tube ciliated cells; Medium in selected glandular cells). | Choose a supplied positive cell population for comparison. HPA also reports undetected adipocytes and cardiomyocytes, so score cell identity as well as overall color (HPA: tissue IHC). |
| Strength of tissue evidence (HPA: Approved; medium staining–RNA consistency). | Use the tissue profile as an expectation, with confirmation from appropriate controls when a specimen differs. Approved staining does not by itself establish specificity in every cell or specimen (HPA: reliability). |
| Isoforms and antibody target (UniProt O00161: SNAP-23a and SNAP-23b). | Two isoforms are recorded, but the supplied sources give no epitope or isoform coverage for a proposed IHC antibody. Do not assign a tissue difference to one isoform (UniProt O00161: isoforms). |
| IHC antibody evidence (HPA: HPA001214, CAB037083 and CAB037317 IHC Approved). | These validation labels support use of the reported IHC pattern as a reference; they do not provide a dilution, antigen-retrieval condition or proof of identical performance across assays (HPA: antibody status). |
| IF/ICC Q&A: Where should fluorescence appear? (HPA: subcellular ICC-IF). | Mainly at the plasma membrane (HPA: supported); primary-cilium localization is additional and uncertain (HPA: subcellular ICC-IF). This IF observation does not supply a paraffin-IHC protocol (HPA: subcellular ICC-IF). |
| Situation | Likely cause | Next action |
|---|---|---|
| No signal in fallopian tube ciliated cells, including ciliary tips (HPA: High in those cells). | A failed staining run or a specimen-level difference is possible; HPA's Approved profile has medium staining–RNA consistency (HPA: reliability; general IHC practice). | Check a positive control, antibody and detection reagents, and the run's retrieval conditions before interpreting the absence (general IHC practice). |
| Only nuclear staining is visible (UniProt O00161: cell membrane; HPA: membranous tissue profile). | The compartment conflicts with both supplied localization records; nonspecific staining or detection background is possible (UniProt O00161; HPA: tissue IHC; general IHC practice). | Compare with controls and inspect membrane detail; withhold a positive call if the nuclear pattern persists without expected staining (general IHC practice). |
| Strong color appears in adipocytes or cardiomyocytes (HPA: Not detected in those cells). | Cross-reactivity or endogenous chromogenic activity may contribute; HPA's result is a cell-specific observation, not a universal negative rule (HPA: tissue IHC; general IHC practice). | Identify the stained cells, review antibody and detection controls, and reassess before calling those cells positive (general IHC practice). |
| Diffuse background obscures cell borders (HPA: membranous tissue profile). | Inadequate blocking or washing, excessive antibody concentration, or prolonged chromogen development can reduce contrast (general IHC practice). | Review blocking and washes, titrate the antibody, and control chromogen development while comparing positive and negative controls (general IHC practice). |
| Signal differs among the listed tissues or cell types (HPA: High, Medium, Low and Not detected entries). | The supplied IHC profile already varies by cell population, and its staining–RNA consistency is medium (HPA: tissue IHC; reliability). | Score the specified cells and compartments in each tissue; compare differences with the reported cell-level pattern before changing assay conditions (HPA: tissue IHC). |
| An IF image shows a primary-cilium signal that paraffin IHC does not clearly reproduce (HPA: subcellular ICC-IF). | HPA calls primary-cilium localization uncertain in ICC-IF; its main supported location is the plasma membrane (HPA: subcellular ICC-IF). | Judge paraffin IHC against the HPA membranous tissue pattern and its reported ciliated-cell staining; avoid requiring an IF-only detail for an IHC positive call (HPA: tissue IHC; subcellular ICC-IF). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Fallopian tube | Ciliated cells (tip of cilia) | High | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Lymphoid tissue | Medium | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Medium | Protein (IHC) | HPA → |
| Breast | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Cerebral cortex | Endothelial cells | Not detected | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot SNAP23 staining in paraffin sections by checking retrieval, cellular compartment, controls, and scoring before interpreting signal (datasheet A02487-1; UniProt O00161).
Validated anti-SNAP23 antibodies have IHC images from human paraffin sections and IF images from human T47D cells (catalog image captions); PA1774 also lists mouse and rat reactivity (catalog applications/reactivity).
A02487-1 has human lymphoma IHC and T47D IF images; A02487 has human rectal adenocarcinoma IHC data (catalog image captions). PA1774 has human placenta IHC data and a T47D IF image, with human, mouse and rat reactivity listed (catalog image captions; catalog applications/reactivity).
Which to pick: For tissue IHC, choose A02487-1 or A02487 according to the sample shown in each SKU’s own human paraffin-section image; neither caption reports the fixative (A02487-1 and A02487 IHC image captions). For IF/ICC, choose A02487-1, which lists both applications and has a T47D IF image (A02487-1 catalog applications; IF image caption). For work across human, mouse and rat samples, consider PA1774 because it lists reactivity in all three species, although its pictured paraffin-section IHC example is human placenta and its fixative is unreported (PA1774 catalog reactivity; IHC image caption).