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- Table of Contents
Plan chromogenic paraffin IHC for TRPV5 using kidney tubular staining as a reference (HPA tissue IHC). This guide covers fixation consistency, the catalog antibody’s IHC dilution of 0.5–1 μg/ml (datasheet A03218-1), and the uncertain staining reliability (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Observed tubular cytoplasm (HPA tissue IHC); apical membrane expected (UniProt) | |
| Staining pattern | Cytoplasmic staining in kidney tubular cells (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A03218-1) | |
| Positive control | Kidney | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A03218-1) | |
| Caveat | Presumed off-target staining; reliability uncertain (HPA tissue IHC) | |
| Regulation | WNK3 increases surface glycoform (UniProt) | |
| Isoform / epitope | 2 isoforms; check cytoplasmic vs extracellular epitope coverage (UniProt) |
Compare the catalog antibody’s citrate pH 6 IHC protocol (datasheet A03218-1) with published chromogenic protocols for skin tumors (PMC13299883), canine cartilage (PMC3229839), and equine cartilage (PMC3344224).
| Sample | Paraffin-embedded human pancreatic cancer tissues; fixative not specified (datasheet A03218-1) |
| Fixation | Image fixative and duration unreported (datasheet A03218-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet A03218-1) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A03218-1) |
| Primary antibody | Rabbit anti-TRPV5, 0.5-1μg/ml (datasheet A03218-1) |
| Primary incubation | Overnight at 4 °C (datasheet A03218-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A03218-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | TRPV5-positive staining in cells in tubules of kidney (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in a group of tissues, including in renal tubules of kidney. No signal in the no-primary control. |
TRPV5 is a six-pass channel assigned to the apical cell membrane, with apical localisation in kidney distal tubular cells reported by similarity (UniProt Q9NQA5 topology/localisation). Kidney tubular cells show high IHC staining, although HPA describes the observed pattern as cytoplasmic and rates its tissue IHC reliability Uncertain because staining and RNA data agree poorly and presumed off-target binding was observed (HPA tissue IHC).
| Kidney tubular cells stain strongly, with signal near the apical edge and some cytoplasmic staining. | This is compatible with the predicted apical membrane location and HPA’s high tubular staining and cytoplasmic profile (UniProt Q9NQA5 localisation; HPA tissue IHC). Record membrane and cytoplasmic signal separately; the HPA profile alone does not establish that every stained structure is TRPV5 (HPA tissue IHC: Uncertain). |
| Nuclei dominate the signal, or staining is confined to a compartment away from the tubular apical region. | A dominant nuclear pattern conflicts with the annotated membrane localisation and six transmembrane segments (UniProt Q9NQA5 topology/localisation). Treat it as suspect and compare with the negative control and tissue morphology (general IHC practice). HPA’s reported cytoplasmic staining means cytoplasmic signal alone cannot be dismissed (HPA tissue IHC). |
| Strong signal appears in adipocytes or appendix glandular cells, with little staining in kidney tubules. | HPA lists those cells as not detected and kidney tubular cells as high (HPA tissue IHC). Consider cross-reactivity or detection-related activity before assigning the signal to TRPV5 (general IHC practice). HPA also reports presumed off-target binding, so its tissue pattern needs cautious interpretation (HPA tissue IHC: Uncertain). |
| DAB color spreads across the section, obscuring cell borders and tubular architecture. | Diffuse color cannot support a compartment call (general IHC practice). Compare with a no-primary control, then assess nonspecific antibody staining and endogenous detection activity if the control is colored (general IHC practice). The expected HPA observation is cellular staining in kidney tubules, not an unstructured field of color (HPA tissue IHC). |
| Kidney tubules show no convincing signal despite a readable section and detection control. | This conflicts with HPA’s high staining in kidney tubular cells (HPA tissue IHC). Check the antibody’s validated IHC-P conditions, primary-antibody concentration, retrieval conditions, and detection reagents as general troubleshooting steps (general IHC practice). Because HPA IHC reliability is Uncertain, one negative section does not settle biological absence (HPA tissue IHC). |
| Membrane topology and compartment | TRPV5 has six transmembrane segments and an annotated apical membrane location (UniProt Q9NQA5 topology/localisation). HPA reports cytoplasmic tissue staining instead, so score the observed compartments explicitly and avoid calling cytoplasmic color proof of apical membrane localisation (HPA tissue IHC: Uncertain). |
| Tissue pattern and validation | HPA reports high staining in kidney tubular cells but rates tissue IHC Uncertain because antibody staining and RNA expression are poorly consistent and presumed off-target binding was disregarded (HPA tissue IHC). Use its positive and negative cell observations as comparison points, not definitive specificity controls. |
| Isoforms and epitope coverage | UniProt lists two TRPV5 isoforms, but the supplied record gives no antibody epitope or isoform coverage (UniProt Q9NQA5 isoforms; HPA antibody record). The isoform annotation therefore cannot explain a particular section’s staining intensity or absence of signal. |
| Detection chemistry | Endogenous activity can contribute color in enzyme-based chromogenic IHC; a no-primary control helps distinguish detection-related signal from primary-antibody-dependent staining (general IHC practice). This is a general workflow consideration, not an established TRPV5-specific effect. |
| Situation | Likely cause | Next action |
|---|---|---|
| Tubular signal is weak or absent. | Primary-antibody concentration, retrieval, or detection may need adjustment (general IHC practice); HPA reports high kidney tubular staining but Uncertain IHC reliability (HPA tissue IHC). | Confirm that the kidney section and detection control are readable, then optimize one IHC-P variable at a time within the catalog antibody’s validated instructions (general IHC practice). Do not infer a TRPV5-specific fixation effect from these data. |
| Most cells show diffuse brown color. | Nonspecific staining or endogenous detection activity may obscure cell boundaries (general IHC practice). | Inspect a no-primary control, check blocking and washes, and reassess whether kidney tubular cells remain distinguishable (general IHC practice; HPA tissue IHC: high in kidney tubular cells). |
| Nuclear staining is stronger than tubular membrane-associated signal. | A nuclear-dominant pattern does not fit the annotated apical membrane location (UniProt Q9NQA5 localisation/topology). | Check morphology and negative controls, then score nuclear and tubular staining separately (general IHC practice). Avoid assigning nuclear color to TRPV5 without independent support. |
| Adipocytes or appendix glandular cells stain strongly. | HPA records those cell types as not detected, and its TRPV5 tissue IHC is Uncertain with presumed off-target binding observed (HPA tissue IHC). | Compare kidney tubular and negative-cell staining under the same detection conditions; investigate primary-dependent staining and detection background before interpreting the positive cells (general IHC practice). |
| A cytoplasmic signal lacks a clear apical edge. | HPA describes cytoplasmic staining, while UniProt assigns TRPV5 to the apical membrane; the supplied evidence does not resolve every cytoplasmic signal (HPA tissue IHC; UniProt Q9NQA5 localisation). | Describe the visible compartment and tubular cell type without claiming membrane-only localisation; interpret with HPA’s Uncertain reliability in view (HPA tissue IHC; general IHC practice). |
| IF/ICC: should an identical pattern be required? | HPA’s subcellular summary says membrane but lists no ICC-IF image cell lines or main location, and its antibody record provides no ICC validation entry (HPA subcellular; HPA antibody record). | Use the separate IF/ICC guide for that application. For this IHC-P result, base the call on tubular cell morphology, controls, and the stated HPA and UniProt caveats (HPA tissue IHC; UniProt Q9NQA5 localisation; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Uncertain — Low consistency between antibody staining and RNA expression data. Presumed off target binding observed and disregarded.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Kidney | Cells in tubules | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
Use matched paraffin sections and compartment-aware controls to troubleshoot TRPV5 chromogenic IHC; interpret staining cautiously because tissue IHC reliability is uncertain (HPA: uncertain).
A03218-1 has paraffin-section IHC images from human pancreatic cancer and mouse and rat kidney (A03218-1 IHC captions). IF/ICC is listed, but no IF image is supplied (A03218-1 catalog).
A03218-1 has IHC images from paraffin sections of human pancreatic cancer and mouse and rat kidney; IHC-F and ICC are also listed applications (A03218-1 IHC captions; catalog). M03218 lists IHC and human, mouse and rat reactivity, but has no IHC image in the payload (M03218 catalog).
Which to pick: Choose A03218-1 for tissue IHC when a documented paraffin-section example matters; its captions show citrate retrieval and chromogenic detection, but do not report the fixative (A03218-1 IHC captions). For IF/ICC, A03218-1 lists ICC and a 0.5–1 μg/ml IF dilution, without an IF image (A03218-1 catalog). Both SKUs list human, mouse and rat reactivity, but A03218-1 provides IHC images in all three species; M03218 is a rabbit monoclonal IHC option without a supplied IHC image (A03218-1 IHC captions; M03218 catalog).