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- Table of Contents
Plan chromogenic VCP IHC in paraffin sections with consistent fixation and cell-level scoring. Expect nuclear and cytoplasmic staining across tissues, with lower staining in pancreatic exocrine and smooth muscle cells (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Nuclear and cytoplasmic staining across tissues (HPA tissue IHC) | |
| Staining pattern | Cells in all tissues show nuclear and cytoplasmic staining (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet PA2137) | |
| Positive control | Adipose tissue+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Keep formalin fixation consistent across paraffin sections. (standard IHC practice; not target-specific) | |
| Caveat | Pancreatic exocrine and smooth muscle cells stain at low levels (HPA tissue IHC) | |
| Regulation | Intensity regulation is not established (UniProt) | |
| Isoform / epitope | No isoforms annotated; chain spans aa 2–806 (UniProt) |
The catalog antibody’s citrate pH 6 retrieval protocol (datasheet PA2137) is accompanied by published VCP IHC protocols for spinal cord (PMC4297454) and cervical biopsies (PMC4951329).
| Sample | Paraffin-embedded mouse intestine tissue; fixative not specified (datasheet PA2137) |
| Fixation | Image fixative and duration unreported (datasheet PA2137); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet PA2137) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PA2137) |
| Primary antibody | Rabbit anti-VCP, 0.5-1μg/ml (datasheet PA2137) |
| Primary incubation | Overnight at 4 °C (datasheet PA2137) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet PA2137) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | VCP-positive staining in adipocytes of adipose tissue (HPA tissue IHC: High). HPA tissue profile: Nuclear and cytoplasmic expression in all tissues. No signal in the no-primary control. |
VCP should show nuclear and cytoplasmic staining across tissues (HPA tissue IHC: nuclear and cytoplasmic expression in all tissues). The tissue pattern has Supported reliability, with medium consistency between antibody staining and RNA expression (HPA tissue IHC). Cytosolic, nuclear and endoplasmic reticulum localisation is consistent with VCP lacking a transmembrane segment (UniProt P55072 localisation and topology). Judge intensity within the cell type being examined (HPA tissue IHC).
| Nuclear and cytoplasmic staining appears in glandular or respiratory epithelial cells, adipocytes, hematopoietic cells, or Purkinje cells. | This matches the broad tissue pattern (HPA tissue IHC: nuclear and cytoplasmic expression in all tissues). These named cell populations are reported as High (HPA tissue IHC). Assess compartments and cell identity together; intensity alone cannot establish antibody specificity (standard IHC interpretation). |
| Staining is confined to an unexpected compartment, such as the extracellular space, while cell nuclei and cytoplasm lack a convincing pattern. | Reassess this as possible background or artefact before calling it VCP: the reported IHC pattern is intracellular and nuclear/cytoplasmic (HPA tissue IHC), and VCP has no transmembrane segment (UniProt P55072 topology). Check morphology and the negative detection control (standard IHC practice). |
| Strong staining is concentrated in a cell population that does not fit the expected pattern for that tissue. | Consider cross-reactivity or endogenous detection activity (standard IHC interpretation). VCP is broadly expressed, so staining outside a named High population is not automatically false (HPA tissue IHC: expression in all tissues). Compare the same cell type across sections and inspect the negative detection control (standard IHC practice). |
| A uniform haze covers cells and tissue spaces, obscuring nuclear and cytoplasmic boundaries. | Treat the result as uninterpretable background until the intracellular pattern can be resolved (standard IHC interpretation). Review blocking, washing, primary-antibody concentration and detection controls as general workflow variables (standard IHC practice); the HPA tissue profile does not identify a VCP-specific cause of haze. |
| No signal is visible in a tissue containing a named High cell population, such as appendix glandular cells. | First suspect an assay or section issue rather than conclude that VCP is absent (standard IHC interpretation; HPA tissue IHC: High in appendix glandular cells). Verify that the expected cells are present, then check positive-control staining and the IHC detection workflow (standard IHC practice). |
| Cell compartment | The supported tissue-level pattern is nuclear plus cytoplasmic (HPA tissue IHC); UniProt also places VCP in cytosol, nucleus and endoplasmic reticulum (UniProt P55072 localisation). Its ER association does not imply membrane-only staining (UniProt P55072 localisation and topology). |
| Tissue and cell-type intensity | HPA reports High staining in selected populations, including adipocytes and bone-marrow hematopoietic cells, but Low staining in pancreatic exocrine and smooth-muscle cells (HPA tissue IHC). Low is not a negative-control designation; HPA lists no negative population in the supplied record (HPA tissue IHC). |
| Antibody evidence | The supplied HPA antibodies have Supported IHC status; their ICC ratings differ (HPA antibody validation: HPA012728, HPA012814, CAB005593). Interpret a new IHC pattern against the tissue and compartment evidence rather than treating an ICC rating as IHC validation (HPA antibody validation). |
| Epitope and retrieval | No antibody epitope or VCP-specific retrieval condition is supplied (supplied UniProt and HPA records). If retrieval needs adjustment, use the catalog antibody's IHC-P guidance and matched controls (standard IHC practice); the sources do not establish VCP-specific fixation sensitivity. |
| IF/ICC Q: What localisation should be expected? | A: Mainly nucleoplasm and cytosol, both supported; mitotic-spindle and primary-cilium-associated locations are marked uncertain (HPA subcellular ICC-IF). Use those uncertain locations cautiously when interpreting images (HPA subcellular ICC-IF). |
| Situation | Likely cause | Next action |
|---|---|---|
| The known-positive population has no chromogenic signal. | The expected cells may be absent from the section, or an IHC workflow step may have failed (standard IHC interpretation); the population is reported High (HPA tissue IHC). | Confirm cell identity on the section, check the positive control, and review the catalog antibody's IHC-P instructions and detection steps (standard IHC practice). |
| Only pancreatic exocrine or smooth-muscle cells look faint. | Low staining is reported for those cells (HPA tissue IHC); faint signal there alone does not demonstrate assay failure. | Compare with a named High population in an appropriate control section before changing assay conditions (HPA tissue IHC; standard IHC practice). |
| Colour appears outside cells or in a compartment inconsistent with the expected pattern. | The pattern may reflect precipitate or nonspecific detection (standard IHC interpretation); expected VCP staining is nuclear and cytoplasmic (HPA tissue IHC). | Inspect tissue morphology and a negative detection control, then score only signal that can be assigned to identifiable cells (standard IHC practice). |
| Many unrelated cell populations stain strongly, with little visible compartment structure. | Broad VCP expression may contribute, but diffuse background or endogenous detection activity can also obscure localisation (HPA tissue IHC; standard IHC interpretation). | Compare nuclear and cytoplasmic detail with the negative detection control; review blocking, washing and detection conditions if the pattern remains diffuse (standard IHC practice). |
| A proposed positive result depends on signal in an unexpected cell type. | Broad expression makes cell-type exclusion unreliable, while cross-reactivity remains possible (HPA tissue IHC: expression in all tissues; standard IHC interpretation). | Record the cell type and compartment, compare with HPA's reported pattern, and use matched controls before assigning the signal to VCP (HPA tissue IHC; standard IHC practice). |
| Nuclear staining is present but cytoplasmic staining is difficult to distinguish. | The tissue IHC profile includes both compartments, though their visibility can differ in a section (HPA tissue IHC; standard IHC interpretation). | Inspect well-preserved cells and the counterstain, then compare the catalog antibody's IHC-P positive control before scoring compartment-specific staining (standard IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | High | Protein (IHC) | HPA → |
| Appendix | Glandular cells | High | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | High | Protein (IHC) | HPA → |
| Breast | Adipocytes | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: VCP is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Troubleshoot VCP staining in paraffin sections by checking retrieval, cellular localisation, detection controls and scoring against the documented tissue pattern.
Anti-VCP antibodies have IHC images from human, mouse and rat paraffin sections (catalog IHC captions); PA2137, PB9454 and M00610-1 also have IF images from human cells (catalog IF captions).
PA2137 was shown on mouse intestine, human mammary cancer and rat tissues; PB9454 on human glioma and meningioma and mouse brain (catalog IHC captions). A00610-2 was shown on mouse and rat colon and human brain; M00610-1 on human breast carcinoma, with a separate IF image from HeLa cells (catalog IHC and IF captions).
Which to pick: For paraffin-section IHC, choose PA2137 with citrate retrieval or PB9454 with EDTA retrieval; both captions show chromogenic staining, but neither reports the fixative (PA2137 and PB9454 IHC captions). For IF/ICC, choose PA2137 or PB9454 for rabbit antibodies with A431 IF images, or mouse monoclonal M00610-1 for a HeLa IF image (catalog applications, hosts, clone and IF captions). For human, mouse and rat IHC, PA2137 has pictured sections from all three species; its catalog also lists monkey reactivity without a pictured monkey section (PA2137 IHC captions; catalog reactivity).