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- Table of Contents
CCNA2 staining is nuclear in a varying fraction of cells across most tissues (HPA tissue IHC). This paraffin IHC guide uses high-staining colon endocrine cells and adipocytes with no detected staining to help plan controls and score positive nuclei (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Nuclear in a varying fraction of tissue cells (HPA tissue IHC) | |
| Staining pattern | Variable fractions of cells show nuclear staining (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet M00700-1) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep tissue fixation consistent across samples (standard IHC practice; not target-specific) | |
| Caveat | Cell-cycle dependence may change the positive-cell fraction (UniProt) | |
| Regulation | Linked to G1/S and G2/M transitions (UniProt) | |
| Isoform / epitope | No annotated isoforms; one 1–432 chain (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet: M00700-1) with one published CCNA2 tissue-chip protocol (PMC11211272: methods).
| Sample | Paraffin-embedded human colorectal adenocarcinoma tissue; fixative not specified (datasheet M00700-1) |
| Fixation | Image fixative and duration unreported (datasheet M00700-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet M00700-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M00700-1) |
| Primary antibody | Rabbit monoclonal (clone HOC-3) anti-CCNA2, 1:50 (datasheet M00700-1) |
| Primary incubation | Overnight at 4 °C (datasheet M00700-1) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet M00700-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CCNA2-positive staining in endocrine cells of appendix (HPA tissue IHC: High). HPA tissue profile: Nuclear expression in a varying fraction of cells in most tissues. No signal in the no-primary control. |
CCNA2 is predominantly nuclear in tissue IHC, with staining in a varying fraction of cells rather than every cell (HPA tissue IHC). It is exclusively nuclear during interphase, while cytoplasmic localisation can occur at prophase or with SCAPER (UniProt P20248). High staining is reported in gastrointestinal endocrine cells; the HPA tissue profile has Enhanced reliability with medium consistency between antibody staining and RNA expression (HPA tissue IHC). CCNA2 has no transmembrane segment (UniProt P20248 topology).
| Discrete nuclear staining in some cells, with unstained neighbours in the same section (HPA tissue IHC). | This fits the reported nuclear expression in a varying fraction of cells (HPA tissue IHC) and CCNA2's cell cycle role (UniProt P20248). Score the fraction of positive nuclei alongside intensity; do not require uniform staining across the tissue. |
| Predominantly cytoplasmic staining with little or no nuclear signal in an IHC section. | Treat a widespread cytoplasmic-only pattern as a localisation discrepancy against the tissue IHC profile (HPA tissue IHC). Cytoplasmic CCNA2 is possible at prophase or when associated with SCAPER (UniProt P20248); compare morphology and controls before calling the pattern artefactual. |
| Strong staining in a cell population reported as undetected, such as adipocytes (HPA: adipocytes not detected). | Check cell identification and controls. The result differs from the supplied HPA observation; cross-reactivity or endogenous chromogenic activity are possibilities, not diagnoses (general IHC practice). An HPA staining level describes the sampled cells and does not prove that every specimen must match. |
| Diffuse colour across nuclei, cytoplasm, and surrounding tissue, with little cell-to-cell distinction. | This is harder to interpret than discrete nuclear staining (HPA tissue IHC). Examine a no-primary control and review blocking, washes, antibody concentration, and detection chemistry for nonspecific background (general IHC practice). Diffuse colour alone does not establish CCNA2 localisation. |
| No nuclear signal in sampled gastrointestinal endocrine cells reported as high by HPA (HPA tissue IHC). | First confirm that the expected cells are present and assess an appropriate positive control. A negative section could reflect sampling or assay performance (general IHC practice); the HPA observation does not establish a CCNA2-specific fixation effect or guarantee positivity in every specimen. |
| Cell cycle and localisation | CCNA2 controls G1/S and G2/M transitions (UniProt P20248). Interphase localisation is exclusively nuclear, while prophase or SCAPER association can include cytoplasm (UniProt P20248). Interpret an occasional cytoplasmic cell in that context; the tissue IHC profile remains predominantly nuclear (HPA tissue IHC). |
| Tissue and cell selection | HPA reports high staining in endocrine cells of the appendix, colon, duodenum, rectum, and small intestine; breast glandular cells and cervical squamous cells are medium (HPA tissue IHC). Name the cell population being scored, since a tissue-wide average can obscure a varying positive fraction (HPA tissue IHC). |
| Antibody evidence | CAB000114 has IHC Enhanced validation, while HPA020626 has no supplied IHC validation status (HPA antibodies). HPA's tissue profile is Enhanced but has medium staining-to-RNA consistency (HPA tissue IHC). Use the validated IHC pattern as a reference without treating every discrepant cell as definitively negative. |
| Protein architecture and retrieval limits | CCNA2 is a 1–432 chain with no annotated signal peptide, propeptide, glycosylation site, or transmembrane segment (UniProt P20248). These annotations give no CCNA2-specific antigen retrieval setting or fixation sensitivity. Choose and document retrieval conditions through assay optimisation (general IHC practice). |
| IF/ICC Q: Where should fluorescence appear? | A: HPA reports enhanced nucleoplasm and cytosol localisation in ICC-IF (HPA subcellular). UniProt reports nuclear interphase localisation and cytoplasm at prophase or with SCAPER (UniProt P20248). Use the separate IF/ICC guide for that application; this tissue IHC section provides no IF/ICC protocol. |
| Situation | Likely cause | Next action |
|---|---|---|
| The expected nuclear signal is absent from a proposed positive section. | The sampled field may lack the relevant cells or the chromogenic assay may have failed (general IHC practice); HPA reports a varying positive fraction (HPA tissue IHC). | Confirm the cell population on the counterstain, inspect a positive control, and review retrieval, antibody incubation, and detection records (general IHC practice). Do not assign a CCNA2-specific fixation cause from these sources. |
| Most colour is cytoplasmic and nuclei remain pale. | The pattern conflicts with predominant tissue nuclear staining (HPA tissue IHC), although cytoplasmic localisation is possible in defined contexts (UniProt P20248). | Compare positive and no-primary controls, inspect cell morphology, and record nuclear and cytoplasmic signal separately (general IHC practice). Avoid calling all cytoplasmic signal specific or all of it artefactual. |
| A reported undetected cell population stains strongly. | Cell misidentification, cross-reactivity, or endogenous detection activity may explain an unexpected result (general IHC practice); HPA lists adipocytes as not detected (HPA tissue IHC). | Verify the cell type, run a no-primary control, and review endogenous peroxidase blocking where relevant to chromogenic detection (general IHC practice). Report the discrepancy against the specified HPA cell population. |
| Diffuse chromogen obscures the boundary of positive nuclei. | Nonspecific reagent binding, inadequate washing, or detection background can reduce contrast (general IHC practice). | Review the no-primary control, blocking and wash steps, antibody concentration, and development time (general IHC practice). Reassess whether distinct nuclear staining remains after background is controlled (HPA tissue IHC). |
| Only a small fraction of otherwise suitable cells stains. | A varying fraction of nuclear-positive cells is expected in most tissues (HPA tissue IHC), consistent with CCNA2's cell cycle role (UniProt P20248). | Record the fraction and intensity in the named cell type, then compare with a positive control and the relevant HPA cell-level observation (HPA tissue IHC; general IHC practice). A low fraction alone does not show assay failure. |
| Signal differs between sections processed in separate IHC runs. | Differences in retrieval, antibody incubation, or chromogen development can alter assay readout (general IHC practice). No target-specific fixation sensitivity is supplied for CCNA2. | Compare run records and controls before interpreting a biological change; standardise the differing workflow step and repeat the comparison if needed (general IHC practice). Keep the expected cell and nuclear pattern anchored to HPA tissue IHC. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Endocrine cells | High | Protein (IHC) | HPA → |
| Colon | Endocrine cells | High | Protein (IHC) | HPA → |
| Duodenum | Endocrine cells | High | Protein (IHC) | HPA → |
| Rectum | Endocrine cells | High | Protein (IHC) | HPA → |
| Small intestine | Endocrine cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
| Cerebral cortex | Endothelial cells | Not detected | Protein (IHC) | HPA → |
| Epididymis | Glandular cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot CCNA2 staining in paraffin sections by checking retrieval, compartment, cell distribution and controls before scoring chromogenic signal.
The catalog includes anti-CCNA2 antibodies with IHC images of human tissue and IF images of cells; Human, Mouse and Rat reactivity is listed for selected SKUs (catalog applications, reactivity and image captions).
M00700-1 has IHC images of paraffin-embedded human colorectal adenocarcinoma and listed IF/ICC use; PB9424 has IHC imaging of the same tissue type and IF imaging of A431 cells (respective catalog applications and image captions). M00700-3 has IHC images of human colon carcinoma and tonsil, while M00700 has an IHC image of paraffin-embedded human colon cancer and is labeled Cyclin A1/A2 (respective catalog titles and image captions).
Which to pick: For paraffin-section IHC, choose the Cyclin A2-specific monoclonal M00700-1 over the Cyclin A1/A2-labeled M00700; M00700-1’s image documents EDTA retrieval at pH 8.0 and a 1:50 primary dilution, but reports no fixative (catalog titles; M00700-1 and M00700 IHC captions). For IF/ICC, PB9424 has an A431 cell IF image at 5 μg/mL, while M00700-1 also lists IF/ICC and has IF images (PB9424 IF caption; M00700-1 catalog applications and IF captions). For Mouse or Rat samples, M00700-1 and M00700-3 list both species and monoclonal antibodies, although their supplied IHC images show human samples (respective catalog titles, reactivity and IHC captions).