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- Table of Contents
Plan paraffin-section DUSP6 IHC around the cytoplasmic staining reported across most tissues (HPA tissue IHC). Compare glandular-cell staining in colon with adipocytes, where staining was not detected, and keep fixation consistent across samples (HPA tissue IHC; standard IHC practice).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasm in most tissues (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic staining across most tissues (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A02157-2) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across samples. (standard IHC practice; not target-specific) | |
| Caveat | Staining and RNA expression have medium consistency (HPA tissue IHC) | |
| Regulation | Expression regulation is unreported (UniProt) | |
| Isoform / epitope | 2 isoforms; no extracellular domain; epitopes unmapped (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet A02157-2) is accompanied by published DUSP6 IHC methods for heart sections (PMC8631968) and clinical tissue sections (PMC12420332).
| Sample | Paraffin-embedded human liver cancer tissue; fixative not specified (datasheet A02157-2) |
| Fixation | Image fixative and duration unreported (datasheet A02157-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A02157-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A02157-2) |
| Primary antibody | Rabbit anti-DUSP6, 2-5 μg/ml (datasheet A02157-2) |
| Primary incubation | Overnight at 4 °C (datasheet A02157-2) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A02157-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | DUSP6-positive staining in glandular cells of adrenal gland (HPA tissue IHC: Medium). HPA tissue profile: Cytoplasmic expression in most tissues. No signal in the no-primary control. |
DUSP6 is a cytoplasmic protein with no transmembrane segment (UniProt Q16828: subcellular location and topology). In paraffin sections, expect cytoplasmic staining in many tissues, including glandular cells, respiratory epithelial cells, hematopoietic cells, and glial cells represented in the HPA tissue panel (HPA: tissue IHC). Treat this as a pattern guide rather than a guarantee for every section: HPA rates its tissue IHC evidence Approved, with medium consistency between staining and RNA expression (HPA: tissue IHC).
| Discrete cytoplasmic signal in glandular cells of adrenal gland, appendix, breast, colon, or duodenum (HPA: Medium). | Consistent with the reported DUSP6 tissue pattern (HPA: cytoplasmic expression in most tissues). Judge the stained cells and compartment together; signal anywhere in the tissue alone is insufficient for a positive call (general IHC practice). |
| Predominantly nuclear or membranous staining, without a convincing cytoplasmic component. | Recheck specificity and image interpretation: UniProt places DUSP6 in the cytoplasm and reports no transmembrane segment (UniProt Q16828). Nuclear staining alone is inconclusive, because HPA reports uncertain nucleoplasmic localization in ICC-IF (HPA: subcellular). |
| Strong signal confined to adipocytes or esophageal squamous epithelial cells (HPA: Not detected). | This disagrees with those HPA cell-level observations; assess cross-reactivity, endogenous detection activity, and tissue identification (HPA: tissue IHC; general IHC practice). HPA's ratings describe its sampled material, not every specimen. |
| Diffuse chromogen across cells, stroma, or the entire section, with little cell-level distinction. | A broad haze cannot establish DUSP6 localization (general IHC practice). Check background controls before scoring it; nonspecific binding or detection-system background can obscure the cytoplasmic pattern (general IHC practice). |
| No signal in a suitable reference section containing adrenal gland glandular cells or bronchial respiratory epithelium (HPA: Medium). | Review tissue preservation, antibody conditions, detection, and controls before calling the specimen negative (general IHC practice). HPA reports Medium staining in those cell types, but its Approved rating has only medium RNA agreement (HPA: tissue IHC). |
| Reference tissue and cell selection (HPA: tissue IHC) | HPA reports Medium staining in adrenal and appendix glandular cells, bronchial respiratory epithelium, bone marrow hematopoietic cells, and cerebral cortex glial cells. It reports Not detected in adipocytes and esophageal squamous epithelial cells; compare the specified cells rather than whole-tissue darkness (HPA: tissue IHC). |
| Evidence strength and antibody choice (HPA: tissue IHC and antibodies) | HPA labels the tissue pattern Approved, with medium consistency against RNA data; CAB017566 is listed as IHC Approved (HPA: antibodies). These labels support cautious pattern comparison, not an assumed result for another antibody or every sample (HPA: tissue IHC). |
| Cellular localization and protein topology (UniProt Q16828; HPA: tissue IHC) | UniProt assigns DUSP6 to the cytoplasm and reports no transmembrane segment; HPA describes cytoplasmic expression in most tissues (UniProt Q16828; HPA: tissue IHC). Neither source supports treating a sharp membrane rim as the expected IHC pattern. |
| Isoforms and processing (UniProt Q16828) | UniProt lists two isoforms, one chain spanning residues 1–381, and no signal peptide or propeptide (UniProt Q16828). The payload gives no epitope location, so it cannot predict whether an antibody detects both isoforms or whether retrieval favors either one. |
| IF/ICC Q&A: should nuclear fluorescence count as the expected result? (HPA: subcellular) | HPA supports cytosolic ICC-IF localization and marks nucleoplasmic localization uncertain; two listed antibodies have Enhanced ICC validation (HPA: subcellular; HPA: antibodies). Interpret any nuclear signal with that caveat. IF/ICC assay setup belongs in its separate guide. |
| Situation | Likely cause | Next action |
|---|---|---|
| Reference positive tissue shows no cytoplasmic stain (HPA: Medium in selected cells). | A failed stain, unsuitable reference section, or an antibody mismatch is possible (general IHC practice). | Verify the cell type, a working positive control, antibody identity, and the IHC-validated antibody's stated conditions; then review retrieval and detection settings (general IHC practice). No DUSP6-specific retrieval requirement is supplied. |
| Signal appears only in nuclei or along cell borders. | That distribution conflicts with cytoplasmic IHC expectations; nucleoplasmic ICC-IF localization remains uncertain (UniProt Q16828; HPA: tissue IHC and subcellular). | Compare cell morphology and controls, then review antibody specificity and detection background (general IHC practice). Do not use uncertain ICC-IF nuclear localization to validate a nuclear-only IHC result. |
| Adipocytes or esophageal squamous epithelial cells stain strongly (HPA: Not detected). | Cross-reactivity or endogenous detection activity may produce unexpected chromogen (general IHC practice). | Run an appropriate primary-antibody omission control and review blocking and detection steps (general IHC practice). Compare the same cell types with HPA observations before assigning DUSP6 positivity. |
| The section has uniform haze that hides cell boundaries. | Nonspecific binding, incomplete blocking, or detection background can reduce contrast (general IHC practice). | Inspect omission and background controls; adjust blocking, antibody concentration, washing, and chromogen development within the assay's validated range (general IHC practice). Score only identifiable cell-associated signal. |
| A weak signal is seen in a tissue expected to stain at Medium level (HPA: tissue IHC). | Cell composition or technical variation may differ from HPA's sampled sections (HPA: tissue IHC; general IHC practice). | Confirm that the reported positive cell population is present; compare a reference section stained in the same run and review counterstain and detection settings (general IHC practice). |
| An IF/ICC image seems inconsistent with the paraffin-section IHC pattern. | HPA records supported cytosol and uncertain nucleoplasm for ICC-IF, while its tissue IHC summary is cytoplasmic (HPA: subcellular; HPA: tissue IHC). | Interpret each assay against its own HPA evidence and controls (HPA: tissue IHC and subcellular; general IHC practice). Consult the separate IF/ICC guide for that assay; do not infer an IF/ICC protocol from this IHC section. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Medium | Protein (IHC) | HPA → |
| Breast | Glandular cells | Medium | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Cervix | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Ovary | Ovarian stroma cells | Not detected | Protein (IHC) | HPA → |
| Vagina | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot DUSP6 staining in paraffin sections by checking retrieval, cellular localisation, controls, and scoring before interpreting differences between samples.
Catalog antibodies A02157-2 and M02157 have paraffin-section IHC images from human tissue (IHC image captions); A02157-2 also has an IF/ICC image from PC-3 cells (IF image caption).
A02157-2 has IHC images from paraffin-embedded human liver cancer, colonic adenocarcinoma, and rectal cancer tissue, plus an IF/ICC image from PC-3 cells (A02157-2 image captions). M02157 has an IHC image from paraffin-embedded human thyroid and is listed for IF/ICC, though its IF captions identify no sample (M02157 image captions; catalog applications).
Which to pick: For tissue IHC, choose A02157-2 when its documented paraffin-section retrieval and detection conditions are useful; M02157 offers a rabbit monoclonal option with a paraffin-embedded human thyroid image (A02157-2 IHC image captions; M02157 catalog and IHC caption). For IF/ICC, A02157-2 has the more informative image caption because it identifies PC-3 cells and the staining conditions (A02157-2 IF image caption; M02157 IF image captions). Both list human, mouse, and rat reactivity, but the supplied IHC images show human tissue only; the fixative is unreported for both (catalog reactivity; IHC image captions).