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- Table of Contents
This guide plans chromogenic HSPA5 IHC around cytoplasmic staining, with duodenal enterocytes as a high-staining reference (HPA tissue IHC). It covers fixation consistency, control selection and scoring against broadly distributed tissue staining (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in tissue IHC (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic; high in immune, neuronal and thyroid follicular cells (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6.0 HIER, 95–98 °C, 20 min (rule: cytoplasmic / membrane antigen) | |
| Positive control | Caudate+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image M00955) | |
| Caveat | Ubiquitous expression limits negative tissue controls (HPA tissue IHC) | |
| Regulation | Expression regulation is unreported (UniProt) | |
| Isoform / epitope | No isoforms annotated; mature chain spans aa 19–654 (UniProt) |
Compare the catalog antibody’s IHC-P protocol with published HSPA5 staining methods for placenta (PMC9926443) and glioma tissue (PMC8121073).
| Sample | Paraffin-embedded tissue sections; fixative not specified (datasheet M00955; sample unspecified) |
| Fixation | Image fixative and duration unreported (datasheet M00955); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat-induced epitope retrieval in citrate buffer, pH 6.0, 20 min at 95–98 °C (standard rule: cytoplasmic / membrane antigen) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% normal serum of the secondary host, 30 min, room temperature (standard) |
| Primary antibody | Rabbit monoclonal (clone BOO-8) anti-HSPA5, 1:50-1:200 (datasheet M00955) |
| Primary incubation | Overnight at 4 °C (standard) |
| Detection | HRP-polymer secondary, DAB chromogen 5–10 min (standard) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | HSPA5-positive staining in neuronal cells of caudate (HPA tissue IHC: High). HPA tissue profile: Ubiquitous cytoplasmic expression, highly abundant in immune, neuronal cells and thyroid follicular cells. No signal in the no-primary control. |
HSPA5 is primarily an ER-lumen chaperone with no transmembrane segment (UniProt P11021 topology). In paraffin-section IHC, expect cytoplasmic staining across many tissues, with prominent signal in immune cells, neuronal cells and thyroid follicular cells (HPA tissue IHC: ubiquitous cytoplasmic expression). HPA rates the tissue staining reliability Enhanced, while reporting medium consistency between staining and RNA expression (HPA tissue IHC: reliability).
| Cytoplasmic staining in neuronal cells or duodenal enterocytes. | This fits an ER-associated cytoplasmic pattern (UniProt P11021: ER lumen; HPA tissue IHC: cytoplasmic expression). Neuronal cells in caudate and cerebral cortex, and duodenal enterocytes, are recorded as High (HPA tissue IHC: High). Assess the cell type and distribution alongside intensity; a strong brown deposit alone does not establish specificity (standard IHC practice). |
| Nuclear-only staining dominates, with little cytoplasmic signal. | This conflicts with the expected tissue IHC pattern (HPA tissue IHC: ubiquitous cytoplasmic expression). Treat it as suspect and check control sections, antibody conditions and counterstain interpretation (standard IHC practice). Do not automatically reject all non-ER signal: UniProt also lists cytoplasm and reports cell-surface localization under high free-iron conditions (UniProt P11021: subcellular location). |
| The strongest signal appears in a cell population outside the expected pattern. | Check cell identity before calling the result specific. HPA records High staining in lung alveolar type II cells but Low staining in oral-mucosa squamous epithelial cells (HPA tissue IHC: High; Low). Unexpected staining can reflect antibody cross-reactivity or endogenous detection activity; compare reagent controls and tissue morphology (standard IHC practice). Low is not a validated negative (HPA tissue IHC: Low; negative list empty). |
| Brown deposit spreads across cells, stroma or section edges without a clear cellular pattern. | This is diffuse background rather than a convincing cytoplasmic result (HPA tissue IHC: cytoplasmic expression; standard IHC practice). Review the secondary-only control, blocking, washes and detection exposure to locate nonspecific or endogenous signal (standard IHC practice). Avoid scoring background intensity as HSPA5 expression (standard IHC practice). |
| A known-positive tissue has no interpretable cellular signal. | An absent signal in a High reference population, such as endometrial glandular cells or lung alveolar type II cells, calls the staining run into question (HPA tissue IHC: High). Check section integrity, reagent controls and detection performance before interpreting study samples (standard IHC practice). HPA's Enhanced IHC rating supports the reported pattern but does not guarantee every run (HPA antibodies: IHC Enhanced). |
| Cellular compartment and topology | ER-lumen localization explains a cytoplasmic IHC readout in sectioned cells (UniProt P11021: ER lumen; HPA tissue IHC: cytoplasmic expression). HSPA5 has no transmembrane segment, yet conditional cell-surface localization is reported in epithelial cells exposed to high free iron; surface staining alone therefore needs context and controls (UniProt P11021: topology; subcellular location). |
| Tissue reference and validation | HPA reports High staining in several specific cell populations and Low staining in others, with no tissue in its supplied negative list (HPA tissue IHC: High; Low; negative list empty). Its tissue result is Enhanced with medium staining-versus-RNA consistency, and three listed antibodies have Enhanced IHC validation (HPA tissue IHC: reliability; HPA antibodies: IHC Enhanced). Use Low tissue as a contrast, not a zero-signal control (HPA tissue IHC: Low). |
| Protein processing and epitope interpretation | UniProt annotates a signal peptide at residues 1–18 and a mature chain at 19–654, with no propeptide or transmembrane segment (UniProt P11021: processing; topology). The supplied record does not locate this antibody's epitope, so it cannot predict epitope exposure, antigen-retrieval needs or fixation sensitivity for HSPA5 (UniProt P11021: processing; supplied evidence scope). |
| IF/ICC Q: Should IF show the same pattern as tissue IHC? | A: Do not equate the two readouts. Tissue IHC is described as ubiquitously cytoplasmic (HPA tissue IHC: profile). HPA ICC-IF lists cytosol as uncertain, while annulus and sperm mid, principal and end-piece locations are approved (HPA subcellular ICC-IF: location status). Interpret IF/ICC with its own controls and guide (standard IF practice). |
| Situation | Likely cause | Next action |
|---|---|---|
| High-reference cells are blank while the counterstain is visible. | The staining or detection run may have failed; an HPA High label does not establish what failed in this section (HPA tissue IHC: High; standard IHC practice). | Confirm the reference cell type on the section, then inspect primary-antibody application and detection controls. Review antigen retrieval as a general paraffin-IHC variable without assuming HSPA5-specific fixation sensitivity (standard IHC practice). |
| Nuclei dominate the signal in an otherwise intact section. | That distribution conflicts with HPA's cytoplasmic tissue pattern; nuclear deposit may be nonspecific or reflect interpretation of the counterstain (HPA tissue IHC: cytoplasmic expression; standard IHC practice). | Compare the primary-omission or secondary-only control and inspect a known High cell population for cytoplasmic signal before scoring the section (HPA tissue IHC: High; standard IHC practice). |
| Low-reference squamous cells stain as strongly as the chosen High-reference cells. | The contrast differs from the supplied HPA levels, although Low does not mean absent (HPA tissue IHC: oral-mucosa squamous cells Low; duodenal enterocytes High). | Recheck cell identity and use matched imaging or scoring conditions. Inspect reagent controls for nonspecific deposit before concluding that the staining is HSPA5-specific (standard IHC practice). |
| Diffuse brown haze obscures cell boundaries. | Nonspecific background or endogenous detection activity can obscure the expected cellular distribution (HPA tissue IHC: cytoplasmic expression; standard IHC practice). | Inspect primary-omission and detection controls; adjust blocking, washing or detection exposure according to the control result (standard IHC practice). Score only interpretable cellular staining (standard IHC practice). |
| Signal is seen mainly at epithelial cell surfaces. | UniProt reports conditional surface localization with high free iron, but the tissue IHC profile is broadly cytoplasmic (UniProt P11021: subcellular location; HPA tissue IHC: profile). | Record the compartment separately from cytoplasmic staining, inspect controls and avoid inferring iron exposure from the image alone (standard IHC interpretation). |
| An IF/ICC image and the paraffin IHC slide appear to disagree. | HPA labels ICC-IF cytosol localization uncertain and reports approved sperm-associated locations; tissue IHC has its own Enhanced reliability designation (HPA subcellular ICC-IF: location status; HPA tissue IHC: reliability). | Interpret each assay with its own cell identity, compartment and controls; use the separate IF/ICC guide for IF-specific decisions (standard IHC/IF practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Caudate | Neuronal cells | High | Protein (IHC) | HPA → |
| Cerebellum | Cells in molecular layer | High | Protein (IHC) | HPA → |
| Cerebral cortex | Neuronal cells | High | Protein (IHC) | HPA → |
| Colon | Endocrine cells | High | Protein (IHC) | HPA → |
| Duodenum | Enterocytes | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: HSPA5 is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Troubleshoot HSPA5 staining in paraffin sections by checking retrieval, compartment, controls and cell-specific scoring before interpreting signal intensity.
Anti-HSPA5 antibodies have IHC images from human lymphoma and testis and rat brain, plus an IF image from HepG2 cells (catalog image captions: M00955, M00955-1, M00955-4).
M00955 has a paraffin-section IHC image of human non-Hodgkin’s lymphoma and an IF image of HepG2 cells (catalog image captions: M00955); M00955-4 has a rat-brain IHC image (catalog image caption: M00955-4). M00955-1 has a paraffin-section IHC image of human testis (catalog image caption: M00955-1).
Which to pick: For paraffin-section IHC, choose M00955 or M00955-1 based on their respective tissue images; neither caption reports the fixative (catalog IHC image captions: M00955, M00955-1). For IF/ICC, choose M00955, a rabbit monoclonal listed for both applications with a HepG2 IF image (catalog applications, clone and IF image caption: M00955). For IHC across species, M00955-4 lists human, mouse and rat reactivity and has IHC captions for all three; those captions do not report tissue processing or fixation (catalog reactivity and IHC image captions: M00955-4).