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Plan NMI chromogenic IHC on paraffin sections using the catalog antibody’s documented conditions (datasheet PB9340). Assess cytoplasmic tissue staining (HPA tissue IHC) while accounting for possible nuclear localization and macrophage secretion (UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in tissue (HPA tissue IHC); nuclear localization is possible (UniProt) | |
| Staining pattern | Cytoplasmic staining in most tissues, including glandular cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet PB9340) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image PB9340) | |
| Caveat | Macrophage-secreted NMI may appear outside cells (UniProt) | |
| Regulation | IFN-alpha increases nuclear localization (UniProt) | |
| Isoform / epitope | No isoforms; the 1–307 chain can be intracellular or secreted (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet PB9340) is followed by three published NMI IHC protocols (PMC5639741; PMC5921859; PMC11079014).
| Sample | Paraffin-embedded human colon cancer tissue; fixative not specified (datasheet PB9340) |
| Fixation | Image fixative and duration unreported (datasheet PB9340); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet PB9340); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PB9340) |
| Primary antibody | Rabbit anti-NMI, 0.5-1μg/ml (datasheet PB9340) |
| Primary incubation | Overnight at 4 °C (datasheet PB9340) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet PB9340) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | NMI-positive staining in glandular cells of appendix (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in most tissues. No signal in the no-primary control. |
NMI is mainly cytoplasmic in tissue IHC, with punctate cytoplasmic granules and possible nuclear localisation (HPA: tissue profile; UniProt Q13287: subcellular location). Strong staining is reported in gastrointestinal glandular cells and cardiomyocytes (HPA: High). The tissue IHC antibody is Approved, although staining has low consistency with RNA expression; NMI has no transmembrane segment (HPA: reliability; UniProt Q13287: topology).
| Strong cytoplasmic staining in colon or small-intestine glandular cells, or in cardiomyocytes. | This matches reported high tissue staining (HPA: High in colon and small-intestine glandular cells; High in cardiomyocytes). Assess the stained cells and compartment, rather than calling the whole section positive (general IHC practice). |
| Cytoplasmic granules, with some nuclear signal in a relevant cell population. | Punctate cytoplasmic NMI and nuclear localisation are documented (UniProt Q13287: subcellular location). Nuclear localisation increases after IFN-alpha treatment (UniProt Q13287: subcellular location); nuclear signal alone does not establish treatment history. |
| A sharp cell-surface rim dominates while cytoplasm is unstained. | A membrane-only pattern conflicts with the reported cytoplasmic tissue profile and absence of a transmembrane segment (HPA: tissue profile; UniProt Q13287: topology). Check the control and staining pattern before assigning it to NMI (general IHC practice). |
| Strong signal appears mainly in adipocytes or esophageal squamous epithelial cells. | Those cells are reported as not detected (HPA: adipocytes; esophageal squamous epithelial cells). Treat the result as unexpected and check for antibody cross-reactivity or endogenous chromogen activity (general IHC practice), while allowing for sample-specific biology. |
| Broad, diffuse chromogen obscures cell boundaries; or a known-positive control is blank. | Neither result permits confident compartment scoring (general IHC practice). A blank colon glandular-cell control conflicts with reported high staining (HPA: High in colon glandular cells); inspect controls and detection conditions before interpreting the test sample. |
| Tissue and cell selection | Appendix, colon, duodenum, rectum, small intestine and stomach glandular cells are High; breast glandular cells are Medium (HPA: tissue IHC). Compare the named cell population, since adipocytes and esophageal squamous cells are Not detected (HPA: tissue IHC). |
| Nuclear distribution | NMI occurs in cytoplasm and nucleus, and nuclear localisation increases after IFN-alpha treatment (UniProt Q13287: subcellular location). Do not require identical nuclear-to-cytoplasmic ratios across conditions. |
| Extracellular signal | Macrophages can secrete NMI during injury or pathogen invasion (UniProt Q13287: function). Extracellular staining therefore needs cell-context review; it cannot, by itself, identify its source or prove secretion in a section. |
| Validation and preparation limits | The listed antibody HPA008588 is IHC Approved, while HPA notes low agreement between staining and RNA data (HPA: antibody validation; reliability). Target-specific fixation sensitivity and retrieval conditions are unreported in the supplied sources; optimise retrieval with controls (general IHC practice). |
| IF/ICC Q: Is a nuclear signal plausible? | A: Yes. Nucleoplasm is approved and cytosol supported in HPA ICC-IF; UniProt also lists nucleus and cytoplasm (HPA: subcellular; UniProt Q13287: subcellular location). This observation informs localisation, not an IF/ICC protocol for this IHC section. |
| Situation | Likely cause | Next action |
|---|---|---|
| No staining in a colon or small-intestine glandular-cell control. | The blank control disagrees with reported High staining (HPA: tissue IHC); a staining-run or detection failure is possible (general IHC practice). | Confirm tissue identity and glandular cells, then review the positive control, primary-antibody application, retrieval, and chromogen development (general IHC practice). |
| Only a crisp membrane outline is visible. | A membrane-dominant pattern is unexpected for cytoplasmic tissue staining and a protein without a transmembrane segment (HPA: tissue profile; UniProt Q13287: topology). | Compare cytoplasmic signal in a reported positive cell type and inspect the no-primary control for nonspecific outline staining (general IHC practice). |
| Chromogen covers cells and intervening tissue uniformly. | Diffuse deposition prevents cellular localisation and may reflect nonspecific staining or endogenous detection activity (general IHC practice). | Inspect no-primary and detection controls; adjust blocking or detection conditions, then rescore identifiable cells (general IHC practice). |
| Adipocytes or esophageal squamous cells stain strongly. | Both populations are Not detected in HPA tissue IHC; cross-reactivity or endogenous activity is possible (HPA: tissue IHC; general IHC practice). | Check no-primary and detection controls, then compare the suspect pattern with a reported positive glandular-cell control (general IHC practice; HPA: High in colon glandular cells). |
| Nuclear staining differs between samples. | NMI can localise to nuclei, with increased nuclear localisation following IFN-alpha treatment (UniProt Q13287: subcellular location); sample treatment is not established by staining alone. | Score nuclear and cytoplasmic compartments separately, compare like cell types, and check documented treatment conditions (general IHC practice). |
| Extracellular colour appears near macrophages. | Macrophage-secreted NMI is documented during injury or pathogen invasion (UniProt Q13287: function), but extracellular chromogen alone cannot establish that mechanism. | Inspect cell boundaries and background controls, and report extracellular signal separately from intracellular staining (general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data. At least one protein variant secreted, tissue location of RNA and protein might differ and correlation is complex.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Glandular cells | High | Protein (IHC) | HPA → |
| Colon | Glandular cells | High | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | High | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | High | Protein (IHC) | HPA → |
| Rectum | Glandular cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Ovary | Ovarian stroma cells | Not detected | Protein (IHC) | HPA → |
| Soft tissue | Fibroblasts | Not detected | Protein (IHC) | HPA → |
Troubleshoot NMI staining in paraffin sections by checking retrieval, compartment, controls, and cell-specific scoring before interpreting chromogenic signal.
Anti-NMI antibodies have paraffin-section IHC images from human colon and lung cancers and an IF image from HeLa cells (catalog image captions); M02768 also lists mouse and rat reactivity (catalog applications/reactivity).
PB9340 shows IHC staining in human colon cancer sections, and M02768 shows IHC staining in human lung cancer sections; both list IHC and IF/ICC applications (catalog image captions and applications). M02768-1 shows IF staining in fixed, permeabilized HeLa cells and lists IF, but not IHC, among its applications (catalog image caption and applications).
Which to pick: For human tissue IHC, choose PB9340 or M02768: each has its own paraffin-section image with EDTA pH 8.0 retrieval and a 0.5–1 μg/ml IHC range; the IHC captions do not report the fixative (PB9340 and M02768 catalog image captions and dilutions). For IF/ICC, PB9340 and M02768 list both applications, while M02768-1 has a HeLa IF image and lists IF only (catalog applications and image captions). For mouse or rat samples, M02768 is the listed cross-species choice and is a mouse monoclonal; its pictured IHC validation is in human tissue, with fixative unreported (M02768 catalog reactivity, clone and IHC image caption).