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- Table of Contents
Plan chromogenic ALDH1A1 IHC in paraffin sections using the catalog antibody’s documented staining conditions. Compare cytoplasmic staining across tissues with HPA tissue IHC patterns and appropriate controls.
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in selected tissues (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic staining; high in epididymal and stomach glandular cells (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A01392) | |
| Positive control | Epididymis+4 more · see all | |
| Negative control | Adrenal gland+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific); Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A01392) | |
| Caveat | Glandular staining varies by tissue (HPA tissue IHC) | |
| Regulation | Tissue-dependent expression (HPA tissue IHC) | |
| Isoform / epitope | No annotated isoforms; one chain spans residues 2–501 (UniProt) |
The catalog antibody’s IHC-P protocol is accompanied by published ALDH1A1 staining protocols for pancreatic cancer and colorectal cancer sections (PMC3135572; PMC6181398).
| Sample | Paraffin-embedded human renal cancer tissues; fixative not specified (datasheet A01392) |
| Fixation | Image fixative and duration unreported (datasheet A01392); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet A01392) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01392) |
| Primary antibody | Rabbit anti-ALDH1A1, 0.5-1μg/ml (datasheet A01392) |
| Primary incubation | Overnight at 4 °C (datasheet A01392) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A01392) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | ALDH1A1-positive staining in glandular cells of epididymis (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in selected tissues. No signal in the no-primary control. |
ALDH1A1 should appear mainly in the cytoplasm, consistent with its cytosolic location and lack of a transmembrane segment (UniProt P00352). In paraffin tissue sections, expect staining in selected cells, including epididymal and stomach glandular cells and liver hepatocytes (HPA tissue IHC). HPA rates tissue staining reliability as Enhanced, while reporting medium consistency between antibody staining and RNA expression (HPA tissue IHC).
| Cytoplasmic staining is strong in epididymal or stomach glandular cells (HPA tissue IHC: High). | This matches the strongest listed tissue patterns and the expected compartment (HPA tissue IHC; UniProt P00352). Judge the relevant cells, rather than treating every cell in the section as equally positive (HPA tissue IHC: expression in selected tissues). |
| Hepatocytes stain at moderate intensity, while nearby cells differ (HPA tissue IHC: Medium in hepatocytes). | A medium hepatocyte signal is compatible with the reference pattern (HPA tissue IHC). Liver-enhanced RNA expression does not require the strongest protein staining on a given slide (HPA tissue IHC: RNA tissue enhanced in liver; hepatocyte staining Medium). |
| The dominant signal is nuclear or confined to cell borders. | Question the localization and check controls and image interpretation: ALDH1A1 is cytosolic and lacks a transmembrane segment (UniProt P00352; HPA subcellular: cytosol). The supplied records do not establish a nuclear or membrane staining pattern. |
| An HPA-listed undetected cell population stains strongly, or staining covers many unrelated cell types. | Consider cross-reactivity or chromogenic detection background (general IHC practice). Compare the named cell type with its HPA entry: for example, adrenal glandular cells are listed as Not detected (HPA tissue IHC). An undetected entry is not a guarantee about every cell in that organ. |
| The entire section has a light haze, or a listed high-staining glandular population has no signal. | Uniform haze obscures cell-level interpretation; absent signal in epididymal or stomach glandular cells makes the run inconclusive (HPA tissue IHC: High in those cells). Review controls and staining conditions before assigning a biological negative (general IHC practice). |
| Cell-specific reference intensity | HPA reports High staining in epididymal and stomach glandular cells, Medium in hepatocytes and several other named populations, and Low in selected neuronal, respiratory and glandular populations (HPA tissue IHC). Match intensity to the cell type when choosing a comparator. |
| Undetected reference populations | HPA lists Not detected for specified cells, including adrenal glandular cells, esophageal squamous epithelial cells and heart cardiomyocytes (HPA tissue IHC). These are cell-specific observations, so whole-organ positive or negative labels would overstate the evidence. |
| Antibody validation | HPA lists IHC as Enhanced for HPA002123 and CAB020690; its tissue profile reports Enhanced reliability but medium agreement with RNA data (HPA antibodies; HPA tissue IHC). Use the protein staining pattern as a reference, with that agreement limit in mind. |
| Protein form and compartment | UniProt lists no signal peptide, transmembrane segment or isoforms and annotates a 2–501 chain (UniProt P00352). These entries support a cytosolic interpretation; they do not identify an antibody epitope or establish an antigen retrieval condition. |
| IF/ICC: what should the signal look like? | Expect cytosolic fluorescence: HPA calls cytosol the enhanced main location and lists no additional location (HPA subcellular). This localization answers the IF/ICC pattern question; staining conditions belong in the separate IF/ICC guide. |
| Situation | Likely cause | Next action |
|---|---|---|
| High-reference glandular cells show no chromogenic signal. | The run may have inadequate detection or an unsuitable staining condition; the supplied sources do not identify a target-specific fixation or retrieval failure (general IHC practice; HPA tissue IHC: High in epididymal and stomach glandular cells). | Confirm the control section, primary antibody and detection steps; review the antibody's validated IHC-P instructions before changing conditions (general IHC practice). Do not score the specimen negative until the control works. |
| Signal is mainly nuclear or outlines cell membranes. | That distribution conflicts with the reported cytosolic location and lack of a transmembrane segment (HPA subcellular; UniProt P00352). | Check the compartment against morphology and the counterstain, then compare positive and negative controls (general IHC practice). Treat the discordant pattern as unconfirmed rather than scoring it as ALDH1A1. |
| An HPA-listed undetected population appears strongly positive. | Cross-reactivity or detection background is possible (general IHC practice); HPA reports Not detected only for the specified cell type in each listed tissue (HPA tissue IHC). | Verify cell identity and compare a no-primary control with a listed positive population (general IHC practice; HPA tissue IHC). Investigate persistent cell-specific staining before interpreting it as expression. |
| Color or haze extends evenly across cells and extracellular spaces. | A non-cell-specific pattern can reflect background from blocking, washes or chromogenic detection (general IHC practice). It does not resemble HPA's cytoplasmic expression in selected tissues (HPA tissue IHC). | Inspect the no-primary control, review blocking and washes, and check chromogen development (general IHC practice). Reassess localization only after the background is low enough to resolve individual cells. |
| A section seems negative because only a low-reference population was examined. | HPA lists Low staining in cells such as lung alveolar cells and duodenal glandular cells; weaker signal there is expected relative to its High glandular references (HPA tissue IHC). | Compare the same cell type and compartment across sections, and include a listed High population as a run control when available (HPA tissue IHC; general IHC practice). |
| Staining of erythrocytes complicates interpretation. | UniProt reports ALDH1A1 protein expression in erythrocytes (UniProt P00352); chromogenic background can also complicate interpretation (general IHC practice). Color in erythrocytes alone cannot establish its cause. | Assess erythrocyte staining alongside a no-primary control and the expected glandular or hepatocyte pattern (general IHC practice; HPA tissue IHC). Avoid using erythrocyte color alone to validate the run. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Epididymis | Glandular cells | High | Protein (IHC) | HPA → |
| Stomach | Glandular cells | High | Protein (IHC) | HPA → |
| Adipose tissue | Adipocytes | Medium | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Medium | Protein (IHC) | HPA → |
| Gallbladder | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Cerebral cortex | Endothelial cells | Not detected | Protein (IHC) | HPA → |
| Cervix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Colon | Endothelial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot ALDH1A1 staining in paraffin sections by checking retrieval, cytosolic localisation, cell identity and detection controls before comparing scores.
The catalog covers human, mouse and rat reactivity, with IHC images from human and mouse tissues and IF/ICC images from A431 and A549 cells (catalog reactivity and image captions).
A01392 has paraffin-section IHC images from human renal cancer, M01392-2 from human gall bladder adenosquamous carcinoma, and PA1671 from human lung cancer (respective IHC captions). M01392-3 has mouse, rat and human lung IHC captions; M01392-1 has a paraffin-section human liver cancer IHC caption (respective IHC captions).
Which to pick: For paraffin-section IHC, start with A01392 at 0.5–1 μg/ml; its renal cancer caption reports citrate retrieval at pH 6 for 20 minutes and DAB detection, but does not report the fixative (catalog A01392 dilution; A01392 IHC caption). For IF/ICC, choose A01392 for its A431 and A549 images at 2 μg/ml (A01392 IF captions). For cross-species IHC, choose rabbit monoclonal M01392-3: it lists human, mouse and rat reactivity, has lung IHC captions for all three, and specifies 1:500–1:2000; its captions do not report fixation or retrieval (catalog M01392-3; M01392-3 IHC captions).