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- Table of Contents
Plan paraffin-section LMNA IHC with guidance on fixation, retrieval, detection, and nuclear staining assessment. Expect nuclear membrane staining across cell types (HPA tissue IHC), while age and disease can increase prelamin-A accumulation in vascular smooth muscle cells (UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Nuclear membrane (HPA tissue IHC); lamina (UniProt) | |
| Staining pattern | Distinct nuclear membrane staining in all cell types (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet M00438-6) | |
| Positive control | Adipose tissue+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Keep paraffin-section fixation consistent (standard IHC practice; not target-specific); Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image M00438-6) | |
| Caveat | Spleen red-pulp cells show low staining (HPA tissue IHC) | |
| Regulation | Prelamin-A accumulates with age and disease (UniProt) | |
| Isoform / epitope | Six isoforms; processing removes the prelamin-A C terminus (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet: M00438-6) is accompanied by a published human motor nerve IHC protocol (PMC5159906 methods).
| Sample | Paraffin-embedded human laryngeal squamous cell carcinoma tissue; fixative not specified (datasheet M00438-6) |
| Fixation | Image fixative and duration unreported (datasheet M00438-6); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet M00438-6); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M00438-6) |
| Primary antibody | Mouse monoclonal (clone 5F3C12) anti-LMNA, 2-5 µg/ml (datasheet M00438-6) |
| Primary incubation | Overnight at 4 °C (datasheet M00438-6) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet M00438-6) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | LMNA-positive staining in adipocytes of adipose tissue (HPA tissue IHC: High). HPA tissue profile: Distinct nuclear membrane expression in all cell types. No signal in the no-primary control. |
LMNA is a nuclear protein that forms part of the lamina at the inner nuclear membrane; it has no transmembrane segment (UniProt P02545). In paraffin-section IHC, expect a distinct nuclear membrane pattern across cell types (HPA tissue IHC: Supported; high consistency with RNA expression). HPA also reports nucleoplasmic and speckle locations in other contexts, so interpret the compartment in the context of the assay (UniProt P02545; HPA subcellular ICC-IF).
| Distinct staining outlines nuclei across several cell types in the section. | This matches the supported tissue IHC pattern: nuclear membrane expression in all cell types (HPA tissue IHC: Supported). Judge whether individual nuclear borders are recognizable, rather than calling a uniformly stained field positive (general IHC practice). |
| Signal appears mainly in cytoplasm or along the cell surface, without nuclear outlines. | This is discordant with the reported tissue IHC pattern and LMNA's nuclear localization (HPA tissue IHC; UniProt P02545). Treat it as possible nonspecific staining and review the controls and detection steps before assigning it to LMNA (general IHC practice). |
| Only an unexpected cell population stains while nearby nuclei lack the expected rim. | An isolated population is at odds with HPA's broad nuclear membrane pattern (HPA tissue IHC). Cross-reactivity or endogenous detection activity is possible, but the slide alone cannot distinguish them; examine antibody and detection controls (general IHC practice). |
| Color spreads through tissue or covers nuclei so their borders cannot be resolved. | Diffuse background does not establish LMNA localization (general IHC practice). Check whether background also appears in a no-primary control, then assess blocking, washes, antibody dilution and chromogen development as separate workflow variables (general IHC practice). |
| No nuclear rim is visible in an expected positive specimen. | Adipocytes and bronchial respiratory epithelial cells are reported as High in HPA tissue IHC (HPA: High in adipocytes; High in bronchial respiratory epithelial cells). If these cells are present, check the run control and assay steps before interpreting absence as low LMNA (general IHC practice). |
| Tissue and cell choice | HPA reports High staining in adipocytes, adrenal glandular cells, bronchial respiratory epithelial cells and several other listed populations, but Low staining in splenic red-pulp cells (HPA tissue IHC). Choose a listed High population for a positive control; do not use the Low population as a definitive negative control (general IHC practice). |
| Antibody evidence | HPA lists IHC as Supported for HPA006660 and CAB004022; it provides no IHC status for HPA006523 (HPA antibodies). Apply the stated validation to those antibodies only. A different catalog antibody needs its own IHC-P evidence before its staining is assumed to follow the HPA pattern (general IHC practice). |
| Isoforms and processing | LMNA has six listed isoforms, including A and C, and prelamin-A/C undergoes processing associated with nuclear envelope targeting and mature lamin formation (UniProt P02545). The supplied evidence does not identify the antibodies' epitopes, so it cannot establish which isoforms or processed forms a particular stain detects. |
| IF/ICC Q&A: should the IHC rim pattern be the only expected IF pattern? | No. HPA reports nuclear speckles as the supported main location in ICC-IF images, while tissue IHC reports distinct nuclear membrane expression (HPA subcellular ICC-IF; HPA tissue IHC). Interpret each result using its assay-specific evidence; this section gives no IF/ICC protocol. |
| Antigen retrieval and fixation | The supplied HPA and UniProt records do not report LMNA-specific retrieval conditions or fixation sensitivity. Optimize retrieval against a suitable positive specimen and assay controls as a general IHC workflow decision; do not infer a target-specific fixation effect from staining levels or LMNA features (general IHC practice). |
| Situation | Likely cause | Next action |
|---|---|---|
| Expected nuclear outlines are absent in a listed High cell population. | A failed assay step or unsuitable antibody conditions are possibilities; absence alone does not identify the cause (general IHC practice). | Confirm that the listed cells are present, inspect the run control, and review the antibody's IHC-P instructions, retrieval, detection and development steps (HPA tissue IHC for expected High cells; general IHC practice). |
| Strong color lies outside nuclei. | That compartment is discordant with the supported tissue IHC pattern (HPA tissue IHC). Nonspecific primary or detection staining is possible (general IHC practice). | Compare the no-primary control, review the antibody's IHC evidence, and adjust blocking, washes or dilution according to the assay controls (general IHC practice). |
| A small cell group stains while neighboring cells lack nuclear rims. | The distribution conflicts with HPA's broad tissue IHC pattern; cross-reactivity or endogenous detection activity may contribute (HPA tissue IHC; general IHC practice). | Check a no-primary control for detection background and compare a separately validated IHC antibody if available; avoid assigning cell-specific LMNA loss from this field alone (general IHC practice). |
| Background obscures nuclear borders throughout the section. | Excess detection signal, insufficient washing or nonspecific binding can obscure compartment scoring (general IHC practice). | Inspect the no-primary control, then review blocking and wash steps, primary dilution and chromogen development; rescore only when nuclear borders can be distinguished (general IHC practice). |
| Splenic red-pulp cells stain weakly. | HPA reports Low staining in this population (HPA: Low in splenic red-pulp cells). | Assess a listed High population and the run control before treating weak red-pulp staining as assay failure; preserve the distinction between Low staining and a negative result (HPA tissue IHC; general IHC practice). |
| IF/ICC images show speckles while the tissue IHC slide shows nuclear rims. | The assay-specific HPA records describe nuclear speckles for ICC-IF and distinct nuclear membrane expression for tissue IHC (HPA subcellular ICC-IF; HPA tissue IHC). | Score the paraffin-section IHC result against the tissue IHC pattern, and evaluate IF/ICC using its separate guide and controls (HPA tissue IHC; HPA subcellular ICC-IF; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — High consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | High | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Appendix | Endocrine cells | High | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | High | Protein (IHC) | HPA → |
| Breast | Adipocytes | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: LMNA is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Troubleshoot LMNA chromogenic IHC by checking retrieval, nuclear localisation, antibody specificity and scoring against the tissue controls.
Catalog images document LMNA IHC in human, mouse and rat paraffin sections (M00438-6, PB9280 and PA1103 image captions) and cellular IF (PB9280 IF image captions).
M00438-6 shows human laryngeal squamous cell carcinoma, PB9280 shows mouse intestine, and M00438-8 shows human liver by IHC (respective IHC image captions). PA1103 shows rat intestine by IHC(P), while M00438-5 has an IF image at 1:50 with no sample identified (respective image captions).
Which to pick: For human tissue IHC, start with mouse monoclonal M00438-6 (catalog: host, clone and IHC application); its paraffin-section caption documents EDTA retrieval at pH 8.0, 2 μg/ml primary antibody and DAB detection (M00438-6 IHC image caption). For IF/ICC, choose PB9280 (catalog: IF and ICC applications), whose IF captions show A431 and NIH3T3 cells at 2 μg/ml (PB9280 IF image captions). For IHC across human, mouse and rat, PB9280 has listed reactivity for all three (catalog: PB9280 reactivity) and paraffin-section images from each species; the fixative is unreported (PB9280 IHC image captions).