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- Table of Contents
Plan PDCD1LG2 IHC-P around variable cytoplasmic tissue staining (HPA tissue IHC). Start with the human IHC-validated antibody at 2 μg/mL (datasheet M03295), and account for a secreted variant when interpreting staining (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Observed cytoplasmic (HPA tissue IHC); membrane and secreted forms annotated (UniProt) | |
| Staining pattern | Variable cytoplasmic staining across tissue cell types (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A03295) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Adipose tissue |
| Fixation | Keep formaldehyde fixation consistent (datasheet A03295 IHC) (selected-SKU IHC image A03295) | |
| Caveat | A secreted variant may weaken RNA–protein agreement (HPA tissue IHC) | |
| Regulation | Staining levels vary by tissue (HPA tissue IHC) | |
| Isoform / epitope | 3 isoforms; check extracellular versus cytoplasmic epitope coverage (UniProt) |
The catalog antibody uses citrate pH 6 retrieval (datasheet A03295). The published protocols below describe PDCD1LG2 IHC in colorectal cancer tissue (PMC5668177; PMC6215508).
| Sample | Formaldehyde-fixed, paraffin-embedded mouse brain tissue (datasheet A03295) |
| Fixation | Image formalin-fixed; duration unreported (datasheet A03295); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6 (datasheet A03295); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% serum (datasheet A03295) |
| Primary antibody | Rabbit anti-PDCD1LG2, 2.5 μg/mL (datasheet A03295) |
| Primary incubation | Overnight at 4 °C (standard) |
| Detection | HRP-polymer secondary, DAB chromogen 5–10 min (standard) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | PDCD1LG2-positive staining in glandular cells of appendix (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression at variable levels in all tissues. No signal in the no-primary control. |
In paraffin-section IHC, expect mainly cytoplasmic staining in tissue cells, with high staining reported in bronchial respiratory epithelium and several glandular or squamous epithelia (HPA: tissue IHC). A cell-surface component is biologically plausible because PDCD1LG2 has an extracellular domain and a transmembrane segment (UniProt Q9BQ51 topology). Treat the pattern cautiously: HPA rates the IHC antibody Approved but reports low consistency between staining and RNA expression (HPA: tissue IHC; HPA: HPA013411 IHC Approved).
| Strong cytoplasmic staining in bronchial respiratory epithelial cells, with nearby cells staining differently (HPA: High in bronchus respiratory epithelial cells). | This matches a documented positive pattern. Evaluate staining within the named cell population and tissue architecture; do not require every cell to match its intensity (HPA: variable cytoplasmic expression across tissues). |
| Predominantly nuclear staining, with little cytoplasmic signal in an expected positive cell population (HPA: tissue IHC cytoplasmic profile). | The compartment differs from the reported IHC pattern and UniProt membrane topology. Investigate nonspecific staining or image interpretation before calling PDCD1LG2 positive (HPA: tissue IHC; UniProt Q9BQ51 topology; general IHC practice). |
| A different cell type stains more strongly than the HPA-listed positive cells in the same section (HPA: tissue IHC positive-cell listings). | Check cell identity and controls. Cross-reactivity or endogenous detection activity can produce a misleading signal; intensity alone cannot assign it to PDCD1LG2 (general IHC practice). |
| Brown signal covers tissue, empty areas, or multiple cell types without a readable cellular pattern (general chromogenic IHC practice). | Diffuse background prevents a confident localisation call. Review the negative control, blocking, antibody concentration and wash conditions before comparing tissues (general IHC practice). |
| No signal in bronchial respiratory epithelial cells despite usable tissue morphology (HPA: High in bronchus respiratory epithelial cells). | This is a failed expected-positive check, not proof of absent PDCD1LG2. Review assay controls and detection conditions; HPA reports variable tissue staining and low RNA–protein consistency (HPA: tissue IHC; general IHC practice). |
| Cell compartment and epitope context (UniProt Q9BQ51 topology). | The mature chain spans residues 20–273, with extracellular residues 20–220 and a transmembrane segment at 221–241. Epitope position could affect which protein pool an antibody detects; the supplied record gives no antibody epitope (UniProt Q9BQ51 topology). |
| Secreted protein variant (HPA: tissue IHC reliability note). | HPA notes that at least one variant is secreted, so protein location can differ from RNA location. Interpret cell-level staining alongside morphology; RNA enrichment alone does not establish an IHC-positive compartment (HPA: tissue IHC reliability note). |
| Isoforms and processing (UniProt Q9BQ51). | UniProt lists three isoforms and a signal peptide at residues 1–19. The supplied evidence does not assign the observed IHC pattern to a particular isoform or show which forms the antibody detects (UniProt Q9BQ51 isoforms and processing). |
| Glycosylation (UniProt Q9BQ51 PTMs). | Five glycosylation sites are annotated at residues 37, 64, 157, 163 and 189. Their presence does not establish a particular retrieval setting or fixation sensitivity for this antibody (UniProt Q9BQ51 glycosylation; evidence scope). |
| Tissue and antibody evidence (HPA: tissue IHC; HPA: HPA013411 validation). | The tissue profile reports variable cytoplasmic staining, while HPA013411 is Approved for IHC. HPA also reports low staining–RNA consistency; use listed cell types as checks, not an expression ranking inferred from RNA (HPA: tissue IHC). |
| IF/ICC Q: Does cytosolic IF confirm the paraffin IHC result? (HPA: subcellular; HPA: HPA013411 validation). | A: HPA calls the cytosol location uncertain and HPA013411 ICC validation Uncertain. Treat IF/ICC as separate evidence; its U-251MG and U2OS images do not validate an IHC retrieval or detection choice (HPA: subcellular; HPA: HPA013411 validation). |
| Situation | Likely cause | Next action |
|---|---|---|
| Bronchial epithelium is blank, while the run's other controls develop colour (HPA: High in bronchus respiratory epithelial cells). | The expected-positive check has failed; the supplied sources do not identify a PDCD1LG2-specific retrieval or fixation failure mechanism (HPA: tissue IHC; evidence scope). | Verify tissue identity, antibody handling and the run control; review retrieval and detection as general IHC variables, then repeat with the documented positive tissue (general IHC practice; HPA: High in bronchus respiratory epithelial cells). |
| Nuclei dominate the signal in an otherwise interpretable section (HPA: tissue IHC cytoplasmic profile). | Nuclear dominance conflicts with the reported tissue profile; nonspecific detection or a reading error is possible (HPA: tissue IHC; general IHC practice). | Compare the negative control and counterstain, then reassess the cell boundaries before scoring any PDCD1LG2-positive cells (general IHC practice). |
| Adipocytes stain strongly (HPA: Not detected in adipose tissue adipocytes). | This conflicts with the listed negative cell population, although one negative listing cannot prove that every specimen must be blank (HPA: tissue IHC). | Check morphology, negative controls and background distribution; withhold a specific positive call until the unexpected signal is resolved (general IHC practice). |
| The whole section has widespread colour with little cellular contrast (general chromogenic IHC practice). | Background from detection reagents, insufficient blocking or inadequate washing may obscure a cell-specific pattern (general IHC practice). | Inspect reagent-only and negative controls; optimise blocking, washes and antibody concentration using the assay's existing instructions (general IHC practice). |
| IHC seems cytoplasmic, but an IF image appears different (HPA: tissue IHC; HPA: subcellular). | The assays have different evidence grades: HPA tissue IHC is Approved, while the cytosol IF location and HPA013411 ICC validation are Uncertain (HPA: tissue IHC; HPA: subcellular; HPA: HPA013411 validation). | Interpret each assay against its own controls and morphology; do not use uncertain ICC localisation to override the documented IHC tissue pattern (HPA: tissue IHC; HPA: subcellular; general IHC practice). |
| A tissue with high RNA expression gives weaker IHC staining than anticipated (HPA: tissue IHC reliability note). | HPA reports low agreement between antibody staining and RNA expression and notes a secreted variant; RNA level is an unreliable stain-intensity prediction here (HPA: tissue IHC reliability note). | Score the observed cells and compartment against HPA's tissue IHC profile, while recording discordance rather than changing a staining call to match RNA (HPA: tissue IHC; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data. At least one protein variant secreted, tissue location of RNA and protein might differ and correlation is complex.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Glandular cells | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Colon | Glandular cells | High | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | High | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot PDCD1LG2 staining by checking retrieval, tissue morphology, staining compartment and cell-level controls (datasheet A03295; HPA; UniProt Q9BQ51).
Validated anti-PDCD1LG2 IHC images cover mouse brain (A03295 caption), human tonsil and colon carcinoma (M03295 captions), and 293T cell sections (M03295-1 caption); IF images cover mouse brain and human tissue (catalog IF captions).
A03295 shows IHC in formaldehyde-fixed paraffin-embedded mouse brain and IF in fixed mouse brain cells or tissue (A03295 image captions); M03295 shows IHC in human tonsil and colon carcinoma and IF/ICC in transfected HEK293 cells and human tissue (M03295 image captions). M03295-1 shows IHC in formaldehyde-fixed untransfected and transfected 293T cell sections after EDTA pH 9 retrieval (M03295-1 IHC caption).
Which to pick: For human tissue IHC, choose the monoclonal M03295, illustrated in tonsil and colon carcinoma at 2 μg/mL; the captions do not report a fixative (M03295 catalog and IHC captions). For human IF/ICC, M03295 has tissue IF and transfected HEK293 cell IF/ICC images, with 20 μg/mL listed for IF (M03295 catalog and IF captions). For human and mouse reactivity, A03295 lists IHC-P and IF, with IHC illustrated in formaldehyde-fixed paraffin mouse brain; M03295-1 is a human-reactive monoclonal illustrated for IHC-P in formaldehyde-fixed 293T cell sections (A03295 catalog and IHC caption; M03295-1 catalog and IHC caption).