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Plan PRKCA staining in paraffin sections using cerebellar Purkinje cells as a high-expression reference (HPA tissue IHC). The IHC-validated antibody PB9318 has a reported working range of 0.5–1 μg/ml (datasheet: PB9318).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic in most tissues; Purkinje cells also show membrane staining (HPA tissue IHC) | |
| Staining pattern | Mostly cytoplasmic; Purkinje cells show cytoplasm/membrane staining (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet PB9318) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | Breast+4 more · see all |
| Fixation | Keep fixation consistent across compared paraffin sections. (selected-SKU IHC image PB9318) | |
| Caveat | Antibody staining has medium consistency with RNA expression (HPA tissue IHC) | |
| Regulation | CSF1-driven macrophage differentiation shifts PRKCA to the nucleus (UniProt) | |
| Isoform / epitope | 0 isoforms annotated; no signal peptide or transmembrane segment (UniProt) |
Start with the catalog antibody’s IHC-P protocol (datasheet: PB9318), then compare published protocols for paraffin nucleus pulposus sections (PMC10249188) and rat brain sections (PMC10707860).
| Sample | Paraffin-embedded mouse intestine tissues; fixative not specified (datasheet PB9318) |
| Fixation | Image fixative and duration unreported (datasheet PB9318); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet PB9318) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PB9318) |
| Primary antibody | Rabbit anti-PRKCA, 0.5-1μg/ml (datasheet PB9318) |
| Primary incubation | Overnight at 4 °C (datasheet PB9318) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet PB9318) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | PRKCA-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in most tissues, high expression in CNS. No signal in the no-primary control. |
PRKCA staining is chiefly cytoplasmic across tissues, with high staining in cerebellar Purkinje cells, hippocampal neurons, and adrenal glandular cells (HPA tissue IHC: Enhanced; medium agreement with RNA). Membrane-associated staining is plausible, and nuclear localization is also reported (UniProt P17252: subcellular location). PRKCA has no transmembrane segment, so membrane staining does not imply an integral membrane protein (UniProt P17252: topology).
| Purkinje cell cytoplasm and membrane stain strongly; nearby cells differ in intensity. | This matches the high Purkinje cell signal recorded in cerebellum (HPA tissue IHC: High in Purkinje cell cytoplasm/membrane). Score identifiable cell types and compartments separately: a stained cerebellar section does not mean every cell should stain equally (HPA tissue IHC: cell-specific observations). |
| Hippocampal neurons or adrenal glandular cells show conspicuous cytoplasmic staining. | These are additional high-staining cell populations (HPA tissue IHC: High in hippocampal neuronal cells and adrenal glandular cells). Predominantly cytoplasmic signal fits the broader tissue profile (HPA tissue IHC: cytoplasmic expression in most tissues). Membrane-associated signal can also fit PRKCA localization (UniProt P17252: cell membrane). |
| Signal is confined to nuclei, or forms a uniform outline around every cell. | Treat this as discordant with the chiefly cytoplasmic tissue pattern (HPA tissue IHC: cytoplasmic expression in most tissues). Nuclear PRKCA is possible (UniProt P17252: nucleus), so nuclear staining alone does not prove an artefact; compare its cell distribution with a validated positive tissue and the run controls (general IHC practice). |
| Strong staining appears in breast adipocytes, skin fibroblasts, or smooth muscle cells. | These specific cell populations were not detected in the HPA tissue survey (HPA tissue IHC: Not detected in breast adipocytes, skin fibroblasts, and smooth muscle cells). Investigate nonspecific antibody binding or endogenous detection activity before calling the signal PRKCA (general IHC practice). HPA observations are reference patterns, not proof that every specimen will be negative. |
| The slide has diffuse haze, or a known high-staining cell population has no signal. | Diffuse haze prevents reliable compartment scoring; absent signal in Purkinje cells, hippocampal neurons, or adrenal glandular cells conflicts with the reported high staining (HPA tissue IHC: High in these cell populations). Check the positive and negative run controls before interpreting a biological difference (general IHC practice). |
| Cell and tissue selection | Cerebellar Purkinje cells, hippocampal neurons, and adrenal glandular cells provide high-staining reference populations; endometrial glandular cells are low, and breast adipocytes are not detected (HPA tissue IHC). Compare the named cell type, not the tissue as a whole. |
| Compartment used for scoring | The tissue profile is chiefly cytoplasmic (HPA tissue IHC). Plasma membrane localization is supported in ICC-IF, while vesicle localization is uncertain (HPA subcellular ICC-IF). UniProt also lists nucleus and mitochondrion membrane (UniProt P17252: subcellular location); those annotations do not establish that either must be visible in every paraffin section. |
| Strength of the reference pattern | HPA rates tissue IHC reliability Enhanced but reports medium consistency between staining and RNA expression (HPA tissue IHC: reliability). Four listed antibodies have Enhanced IHC validation (HPA antibodies: HPA006563, HPA006564, CAB003844, CAB016290). Use the pattern as a benchmark, while resolving discordant results with controls. |
| IF/ICC Q: Where should PRKCA appear? | A: Mainly in cytosol, with supported plasma membrane localization; vesicle localization is uncertain (HPA subcellular ICC-IF). This answers the localization question only. The ICC-IF evidence does not specify an IHC-P dilution, retrieval condition, or fluorescent staining workflow. |
| Situation | Likely cause | Next action |
|---|---|---|
| High-staining reference cells are blank. | The result conflicts with reported high signal in Purkinje cells, hippocampal neurons, or adrenal glandular cells (HPA tissue IHC). A failed staining run is one possibility (general IHC practice). | Verify tissue identity and positive-control performance; then review the validated antibody's IHC-P conditions, retrieval, detection, and reagent handling (general IHC practice). No PRKCA-specific retrieval effect is established here. |
| Signal covers the whole section as a faint haze. | Diffuse background can obscure the chiefly cytoplasmic pattern (HPA tissue IHC: tissue profile; general IHC practice). | Review the negative control, blocking, washes, antibody concentration, and chromogen development before scoring cells (general IHC practice). |
| Unexpected cells stain strongly. | Cells recorded as not detected, such as breast adipocytes or skin fibroblasts, may show nonspecific binding or endogenous detection activity (HPA tissue IHC: Not detected; general IHC practice). | Confirm the cell identity and compare primary-omission and appropriate detection controls; interpret any residual cell-specific signal cautiously (general IHC practice). |
| Only nuclei stain. | Nuclear localization is reported, but a nucleus-only section differs from the chiefly cytoplasmic tissue pattern (UniProt P17252: nucleus; HPA tissue IHC: tissue profile). | Compare a positive-control section and its cytoplasmic signal, then inspect background and detection controls before assigning nuclear PRKCA (general IHC practice). |
| All cells show identical membrane outlines. | PRKCA can associate with membrane, but the documented tissue signal varies by cell population (UniProt P17252: cell membrane; HPA tissue IHC: cell-specific levels). | Check whether cytoplasmic signal accompanies outlines in expected cells; assess negative controls and nonspecific edge staining (general IHC practice). |
| Two antibodies give different tissue patterns. | Enhanced IHC validation supports the HPA pattern but does not guarantee identical results in every specimen (HPA antibodies: Enhanced IHC; HPA tissue IHC: medium agreement with RNA). | Compare the same identified cells, compartments, and run controls across sections; report unresolved discordance rather than merging the scores (general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Cerebellum | Purkinje cells - cytoplasm/membrane | High | Protein (IHC) | HPA → |
| Hippocampus | Neuronal cells | High | Protein (IHC) | HPA → |
| Appendix | Lymphoid tissue | Medium | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Parathyroid gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Salivary gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Skin | Fibroblasts | Not detected | Protein (IHC) | HPA → |
| Smooth muscle | Smooth muscle cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot PRKCA staining in paraffin sections by checking retrieval, cell type and compartment before comparing chromogenic signal across specimens.
Anti-PRKCA antibodies have paraffin-section IHC images from human and mouse samples (catalog IHC captions) and an IF image for M00743 (catalog IF caption). Listed reactivity includes human, mouse and rat (catalog reactivity).
PB9318 shows mouse intestine IHC (PB9318 IHC caption); PA1065 shows human mammary cancer IHC (PA1065 IHC caption); M00743 shows human pituitary tumor IHC (M00743 IHC caption). M00743-6 shows mouse liver IHC (M00743-6 IHC caption); A00743T495 shows PKC-pan T495 in human breast carcinoma IHC (A00743T495 IHC caption); A00743T497 shows p-PKC-pan αT497 in human breast carcinoma IHC (A00743T497 IHC caption).
Which to pick: For tissue IHC, PB9318 has a paraffin-section mouse intestine example using citrate retrieval at pH 6 (PB9318 IHC caption), while PA1065 has a paraffin-section human mammary cancer example using EDTA retrieval at pH 8 (PA1065 IHC caption); the fixative is unreported in both captions (PB9318 and PA1065 IHC captions). For IF/ICC, M00743 is a rabbit monoclonal listed for both applications, with an IF image and a listed IF dilution of 1:50 (M00743 catalog entry and IF caption). For cross-species IHC, M00743-6 is a rabbit monoclonal with IHC images from human, mouse and rat samples (M00743-6 catalog entry and IHC captions).