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- Table of Contents
Plan chromogenic ABL2 IHC in paraffin sections with the catalog antibody at 2–5 μg/mL (datasheet PB9913). Expect general nuclear staining in tissue IHC (HPA tissue IHC), while interpreting its uncertain reliability alongside the cytoplasmic and cytoskeletal annotation (HPA tissue IHC; UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Observed nuclear (HPA tissue IHC); annotated cytoplasm/cytoskeleton (UniProt) | |
| Staining pattern | General nuclear staining across tissues (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet PB9913) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Keep fixation conditions consistent. (standard IHC practice; not target-specific) | |
| Caveat | Tissue IHC reliability is uncertain amid splice/transcript discrepancies (HPA tissue IHC) | |
| Regulation | Expression regulation is not specified (UniProt) | |
| Isoform / epitope | 9 isoforms; epitope coverage is unknown (UniProt) |
The catalog antibody protocol (datasheet PB9913) is followed by three published ABL2 IHC protocols (PMC4051810; PMC9818720; PMC10540884).
| Sample | Paraffin-embedded human gallbladder carcinoma tissue; fixative not specified (datasheet PB9913) |
| Fixation | Image fixative and duration unreported (datasheet PB9913); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet PB9913); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PB9913) |
| Primary antibody | Rabbit anti-ABL2, 2-5μg/ml (datasheet PB9913) |
| Primary incubation | Overnight at 4 °C (datasheet PB9913) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet PB9913) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | ABL2-positive staining in glandular cells of appendix (HPA tissue IHC: Medium). HPA tissue profile: General nuclear expression. No signal in the no-primary control. |
ABL2 is a cytoplasmic, cytoskeleton-associated protein with no transmembrane segment (UniProt P42684: subcellular location and topology). In paraffin sections, HPA reports a general nuclear staining pattern, including medium staining in appendix glandular cells and bone marrow hematopoietic cells (HPA: tissue IHC). Interpret that nuclear pattern cautiously: HPA rates its IHC reliability Uncertain and notes a splice or transcript discrepancy and evidence for several subcellular locations (HPA: reliability description).
| Defined nuclear staining in appendix or breast glandular cells, or bone marrow hematopoietic cells. | This resembles HPA's medium IHC staining and general nuclear profile (HPA: tissue IHC). It is a plausible slide result, but nuclear localisation alone does not establish ABL2 specificity: all three listed IHC antibodies are rated Uncertain (HPA: antibodies). |
| Cytoplasmic or cytoskeleton-associated staining in identifiable cells. | This fits UniProt's cytoplasm and cytoskeleton annotation (UniProt P42684: subcellular location). HPA ICC-IF places ABL2 mainly in the cytosol, with additional intermediate-filament localisation (HPA: subcellular). Compare it with the nuclear IHC report rather than rejecting either compartment on sight. |
| A sharp cell-surface rim, extracellular deposit, or signal detached from identifiable cells. | An exclusively membrane-like or extracellular pattern is poorly supported for a protein with no transmembrane segment and a cytoplasmic/cytoskeletal annotation (UniProt P42684: topology and subcellular location). Treat it as a possible detection artefact and check controls before assigning it to ABL2 (standard IHC practice). |
| Strong staining confined to a cell population reported as low, such as lung alveolar cells or liver cholangiocytes. | This conflicts with HPA's low staining in those cells (HPA: tissue IHC). Consider cross-reactivity or endogenous detection activity, especially if the signal persists in a no-primary control (standard IHC practice). HPA's uncertain IHC reliability prevents treating this mismatch alone as proof of a false positive (HPA: reliability). |
| Diffuse colour across cells and tissue spaces, or no staining in an appendix or bone marrow section. | Diffuse signal without cell boundaries limits compartment scoring and calls for background controls (standard IHC practice). An absent result in tissue with reported medium staining warrants a technical check, but HPA's medium rating is a reported observation, not a guarantee for every section (HPA: tissue IHC and reliability). |
| Compartment evidence | HPA reports general nuclear tissue IHC staining but rates that IHC profile Uncertain; UniProt annotates cytoplasm/cytoskeleton, while HPA ICC-IF approves cytosol and intermediate filaments (HPA: tissue IHC, antibodies and subcellular; UniProt P42684: location). Record nuclear and cytoplasmic staining separately. |
| Choice of tissue and cells | Appendix glandular cells, bone marrow hematopoietic cells, and bronchus respiratory epithelial cells have reported medium staining; thyroid glandular cells, lung alveolar cells, and pancreas exocrine glandular cells are reported low (HPA: tissue IHC). These are comparison levels, not absolute positive or negative controls. |
| Antibody validation | HPA rates the IHC result Uncertain for HPA001866, HPA072754, and CAB017106; HPA072754 has Approved ICC status (HPA: antibodies). ICC approval supports its cell-imaging localisation assessment but does not upgrade its IHC rating. |
| Isoforms and epitope | UniProt lists nine ABL2 isoforms and SH3, SH2, and kinase domains (UniProt P42684: isoforms and domains). An antibody's epitope would determine which isoforms or domain-containing forms it detects; no epitope is supplied here, so do not infer coverage. |
| Processing and topology | UniProt reports no signal peptide, propeptide, or transmembrane segment, and describes the chain as residues 2–1182 (UniProt P42684: processing and topology). An extracellular or uniformly surface-restricted IHC pattern therefore needs independent support before assignment to ABL2. |
| IF/ICC interpretation | For the separate IF/ICC application, expect mainly cytosolic signal with possible intermediate-filament signal (HPA: subcellular). Those approved ICC-IF locations help interpret compartment differences; they do not supply an IF/ICC protocol or establish the paraffin-section nuclear result as specific (HPA: subcellular and IHC reliability). |
| Situation | Likely cause | Next action |
|---|---|---|
| No signal in appendix glandular cells or bone marrow hematopoietic cells. | These cells have medium HPA IHC staining, so absent signal may reflect assay performance or section variation; their staining is not guaranteed (HPA: tissue IHC and reliability). | Check the section and detection controls, then review the catalog antibody's IHC-P dilution and antigen-retrieval instructions if available (standard IHC practice). Do not infer ABL2 absence from one blank section. |
| Only a nuclear signal is visible. | Nuclear staining matches HPA's tissue profile, but that profile is rated Uncertain and differs from UniProt's cytoplasmic/cytoskeletal annotation and HPA's approved ICC-IF locations (HPA: tissue IHC, reliability and subcellular; UniProt P42684: location). | Score its cell type, distribution, and no-primary control; describe it as an HPA-like IHC pattern with unresolved compartment specificity (HPA: tissue IHC and reliability; standard IHC practice). |
| Cytoplasmic staining appears without a clear nuclear signal. | Cytoplasmic localisation is supported by UniProt and HPA ICC-IF, despite HPA's general nuclear tissue IHC profile (UniProt P42684: location; HPA: subcellular and tissue IHC). | Record the compartments separately and compare staining across the reported medium and low cell populations; avoid declaring the cytoplasmic signal wrong solely because the tissue IHC profile is nuclear (HPA: tissue IHC and reliability). |
| Strong signal appears mainly in HPA low-staining cells. | The cell distribution differs from the reported low levels and may reflect cross-reactivity or endogenous chromogenic detection activity (HPA: tissue IHC; standard IHC practice). | Compare an adjacent no-primary section and the reported medium-staining cell populations; investigate persistent background before interpreting the low-cell signal as ABL2 (HPA: tissue IHC; standard IHC practice). |
| Colour is diffuse or remains in the no-primary control. | A signal that does not require primary antibody is consistent with background or endogenous detection activity (standard IHC practice). | Review blocking, washing, chromogen exposure, and the detection-system controls; rescore only signal that remains cell-associated above the control (standard IHC practice). |
| A crisp rim is interpreted as cell-surface ABL2. | A surface-only assignment conflicts with the absence of a transmembrane segment and the cytoplasmic/cytoskeletal location annotations (UniProt P42684: topology and location). | Check whether the rim also appears in controls or follows tissue edges, then report the observed pattern without assigning it to ABL2 unless independently supported (standard IHC practice; UniProt P42684: topology). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Uncertain — Caution, splice and/or transcript discrepancy exists and external data suggests several subcellular locations.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Medium | Protein (IHC) | HPA → |
| Breast | Glandular cells | Medium | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Medium | Protein (IHC) | HPA → |
| Caudate | Glial cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: ABL2 is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Use the paraffin-section IHC evidence as the starting point, then verify ABL2 staining by compartment, cell type, and controls.
PB9913 has real paraffin-section IHC images from human gallbladder carcinoma and mouse brain (PB9913 IHC captions); no IF/ICC data are provided (catalog: PB9913 applications and images).
PB9913 is listed for IHC and for human, mouse, and rat reactivity (catalog: PB9913 applications and reactivity). Its IHC images document paraffin sections of human gallbladder carcinoma and mouse brain (PB9913 IHC captions).
Which to pick: Choose PB9913 for paraffin-section tissue IHC; its captions use 2 μg/ml antibody after EDTA pH 8.0 retrieval, and the fixative is unreported (PB9913 IHC captions). No listed SKU has IF/ICC validation (catalog: PB9913 applications and images). For cross-species work, PB9913 lists human, mouse, and rat reactivity, while its IHC captions document human and mouse sections only (catalog: PB9913 reactivity; PB9913 IHC captions).