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- Table of Contents
Plan DMC1 IHC in paraffin sections using testis as a positive tissue, where pachytene spermatocytes show high nuclear staining (HPA tissue IHC). Compare nuclear signal across cell populations and keep fixation conditions consistent.
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Nuclear staining in pachytene spermatocytes (HPA tissue IHC) | |
| Staining pattern | High nuclear signal in pachytene spermatocytes (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A02978-3) | |
| Positive control | Testis | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation conditions consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Signal depends on the proportion of pachytene spermatocytes (HPA tissue IHC) | |
| Regulation | High in pachytene spermatocytes (HPA tissue IHC) | |
| Isoform / epitope | 2 isoforms; epitope coverage is unspecified (UniProt) |
The catalog antibody uses heat-mediated EDTA retrieval at pH 8.0 (datasheet A02978-3). Published DMC1 IHC examples cover cervical cancer, skin, and mouse testis (PMC2657811; PMC6554469; PMC4125102).
| Sample | Paraffin-embedded mouse testis tissue; fixative not specified (datasheet A02978-3) |
| Fixation | Image fixative and duration unreported (datasheet A02978-3); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A02978-3); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A02978-3) |
| Primary antibody | Rabbit anti-DMC1, 2-5 μg/ml (datasheet A02978-3) |
| Primary incubation | Overnight at 4 °C (datasheet A02978-3) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A02978-3) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | DMC1-positive staining in pachytene spermatocytes of testis (HPA tissue IHC: High). HPA tissue profile: High nuclear expression in spermatocytes. No signal in the no-primary control. |
DMC1 is a nuclear, chromosome-associated meiotic recombinase that binds single-stranded DNA near break sites (UniProt Q14565). In paraffin-section IHC, expect strong nuclear staining in testicular pachytene spermatocytes (HPA tissue IHC: High; reliability: Enhanced). DMC1 has no transmembrane segment, so a dominant membrane pattern would conflict with its annotated location (UniProt Q14565 topology).
| Strong nuclear chromogen in pachytene spermatocytes, with adjacent cells distinguishable. | This matches the reported positive cell and compartment (HPA tissue IHC: High nuclear expression in spermatocytes; pachytene spermatocytes: High). Read staining against section morphology and the counterstain before scoring. |
| Predominantly membrane or cytoplasmic staining, with little convincing nuclear signal. | This conflicts with the annotated nuclear and chromosome location and the lack of a transmembrane segment (UniProt Q14565). Consider nonspecific staining or a detection artefact; location alone cannot identify its cause. |
| Strong staining in cell types reported as undetected, such as adipocytes or adrenal glandular cells. | That distribution conflicts with those HPA tissue observations (HPA tissue IHC: Not detected in adipocytes and adrenal glandular cells). Check morphology, cross-reactivity and endogenous detection activity before interpreting it as DMC1. |
| Diffuse chromogen covers several compartments or obscures nuclear boundaries. | The slide cannot support a compartment-specific DMC1 call (UniProt Q14565: nucleus; HPA tissue IHC: high nuclear expression). Excess detection or inadequate blocking or washing can produce background (general IHC practice); compare negative controls. |
| No nuclear signal in a morphologically adequate testis section containing pachytene spermatocytes. | This is a failed expected-positive result under the reported tissue pattern (HPA tissue IHC: pachytene spermatocytes High). Check the IHC-validated antibody and detection controls before treating the sample as DMC1-negative (general IHC practice). |
| Tissue and cell selection | Testis containing pachytene spermatocytes offers a reported positive reference (HPA tissue IHC: High). Adipocytes and adrenal glandular cells are reported as undetected (HPA tissue IHC); neither establishes a universal negative result for every specimen. |
| Compartment and molecular form | DMC1 is nuclear and chromosome-associated, binds single-stranded DNA, and forms a nucleoprotein filament (UniProt Q14565). These annotations support nuclear interpretation but do not specify a required chromogen texture or puncta count. |
| Isoforms and processing | Two isoforms are listed, with no signal peptide, propeptide or annotated glycosylation sites (UniProt Q14565). The supplied record does not map the antibody epitope, so it cannot establish isoform coverage or an epitope-specific retrieval setting. |
| Antibody evidence | HPA lists enhanced IHC validation for HPA001232 and CAB015397 (HPA antibodies). This supports the reported tissue pattern; it does not determine how an unspecified catalog antibody will perform in the user's section. |
| What should IF/ICC show? | Nucleoplasmic localisation is approved in HPA ICC-IF images from A-431 and U2OS (HPA subcellular). That is an IF/ICC localisation reference; it does not supply an IF protocol or replace the testis IHC pattern. |
| Situation | Likely cause | Next action |
|---|---|---|
| Expected testis nuclei are blank. | The staining run may have failed, or the section may lack identifiable pachytene spermatocytes (HPA tissue IHC: pachytene spermatocytes High). | Confirm cell morphology and run controls; verify primary antibody use, antigen retrieval and detection steps against the IHC protocol (general IHC practice). |
| Signal is strongest at membranes or in cytoplasm. | That location conflicts with nuclear and chromosome annotation and absent transmembrane topology (UniProt Q14565). | Compare with a no-primary control, inspect nuclear counterstaining, and review detection background before assigning DMC1 positivity (general IHC practice). |
| Many cells stain strongly outside the expected testis population. | A broad pattern conflicts with high nuclear expression in spermatocytes (HPA tissue IHC); cross-reactivity or endogenous activity is possible. | Identify stained cell types by morphology, compare reported undetected tissues, and inspect no-primary and detection controls (HPA tissue IHC; general IHC practice). |
| Diffuse brown haze obscures nuclei. | Nonspecific detection, inadequate blocking or insufficient washing can obscure localisation (general IHC practice). | Check a no-primary control, then review blocking, primary dilution, detection and washes within the validated IHC workflow (general IHC practice). |
| Only faint staining appears in heart muscle. | Low staining of cardiomyocytes is reported (HPA tissue IHC: Low); it is a poor substitute for the high testis reference. | Assess the run with testis pachytene spermatocytes as the positive reference and avoid scoring faint heart signal in isolation (HPA tissue IHC: High in pachytene spermatocytes; Low in cardiomyocytes). |
| The IF/ICC image looks nucleoplasmic but the IHC section is negative. | HPA's approved nucleoplasmic ICC-IF location and its testis tissue IHC pattern are observations from different applications (HPA subcellular; HPA tissue IHC). | Evaluate the paraffin-section IHC with its own testis positive and detection controls; use the separate IF/ICC guide for fluorescence workflow decisions (general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — High consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Testis | Pachytene spermatocytes | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot DMC1 staining in paraffin sections by checking retrieval, nuclear localisation, spermatocyte specificity and matched controls before scoring.
Two anti-DMC1 antibodies have paraffin-section IHC figures for mouse and rat testis or human heart (catalog IHC captions). A02978 lists IF/ICC applications, but supplies no IF figure (catalog applications/images).
A02978-3 has IHC figures from paraffin-embedded mouse and rat testis; its listed reactivity is human, mouse and rat (A02978-3 IHC captions; catalog reactivity). A02978 has a peptide-blocked IHC figure from paraffin-embedded human heart and lists IF/ICC for human and mouse (A02978 IHC caption; catalog applications/reactivity).
Which to pick: For testis paraffin-section IHC, choose A02978-3: its mouse and rat figures use EDTA retrieval at pH 8.0, and the catalog recommends 2–5 μg/ml; the fixative is unreported (A02978-3 IHC captions; catalog dilution). For human heart paraffin-section IHC, A02978 has a peptide-blocked figure and a 1:100–1:300 IHC range; its fixative is unreported (A02978 IHC caption; catalog dilution). For IF/ICC, choose polyclonal A02978 based on its listed applications, though no IF figure is supplied; for the widest listed species reactivity, choose A02978-3 for human, mouse and rat, while its IHC figures document mouse and rat only (A02978 catalog applications/images and dilution details; A02978-3 catalog reactivity and IHC captions).