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- Table of Contents
Plan chromogenic GABRD IHC on paraffin sections using cerebellar granule cells as a high-staining reference (HPA tissue IHC). This guide covers fixation consistency, the catalog antibody’s 1:100–1:300 IHC range (datasheet A30688), and interpretation of neuronal cytoplasmic and synaptic staining (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Neuronal cytoplasm and synapses (HPA tissue IHC); cell membrane expected (UniProt) | |
| Staining pattern | Neuronal cytoplasm and synapses; cerebellar granule cell membrane (HPA tissue IHC) | |
| Antigen retrieval | Tris-EDTA pH 9.0 HIER, heat-mediated (datasheet A30688) | |
| Positive control | Cerebellum+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation conditions consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Presumed off-target binding can confound staining (HPA tissue IHC) | |
| Regulation | No expression regulation annotated (UniProt) | |
| Isoform / epitope | No isoforms annotated; extracellular versus cytoplasmic epitope matters (UniProt) |
The catalog antibody uses Tris-EDTA pH 9.0 retrieval (datasheet A30688); the published HCC protocol uses citrate pH 6.0 (PMC13470470).
| Sample | Paraffin-embedded human tonsil tissue; fixative not specified (datasheet A30688) |
| Fixation | Image fixative and duration unreported (datasheet A30688); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Tris-EDTA pH 9.0 (datasheet A30688); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% normal serum of the secondary host, 30 min, room temperature (standard) |
| Primary antibody | Rabbit anti-GABRD, 1:100 - 1:300 (datasheet A30688) |
| Primary incubation | Overnight at 4 °C (standard) |
| Detection | HRP-polymer secondary, DAB chromogen 5–10 min (standard) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | GABRD-positive staining in granular cells - cytoplasm/membrane of cerebellum (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in neuronal cells and synapses. No signal in the no-primary control. |
GABRD is a 4-pass cell membrane receptor subunit (UniProt O14764 topology). In paraffin-section IHC, expect the strongest staining in cerebellar granular cells, at the cytoplasm/membrane, with neuronal and synaptic expression elsewhere (HPA: tissue IHC). HPA rates the IHC evidence Enhanced, while reporting medium agreement with RNA data and presumed off-target staining that was disregarded (HPA: tissue IHC reliability).
| Strong cytoplasmic/membrane staining in cerebellar granular cells. | This matches the clearest supplied positive reference: cerebellar granular cells are High (HPA: tissue IHC). Judge the pattern within the identified cells, since HPA also describes neuronal and synaptic expression (HPA: tissue IHC profile). |
| Predominantly nuclear staining, without a neuronal cytoplasmic/membrane pattern. | A nuclear pattern lacks support from the cell membrane topology and observed tissue profile (UniProt O14764 topology; HPA: tissue IHC). Treat it as suspect until controls and tissue morphology establish that the signal is specific. |
| Strong staining concentrated in an unexpected cell population. | Cell identity matters: HPA reports cerebellar granular cells and selected neuronal cells, but also endocrine cells in colon, duodenum and rectum (HPA: tissue IHC). Outside those reported contexts, investigate cross-reactivity or endogenous detection activity before calling it GABRD. |
| Broad, even chromogen deposits obscure cells and tissue boundaries. | This is difficult to score as the localized neuronal pattern reported by HPA (HPA: tissue IHC). Diffuse background can reflect nonspecific detection or inadequate background control (general IHC practice); compare a no-primary control and tissue morphology. |
| No convincing signal in cerebellar granular cells. | That conflicts with the High cerebellar reference pattern (HPA: tissue IHC). Review section quality, detection controls and the IHC workflow before interpreting a test tissue as negative (general IHC practice). |
| Cellular location and topology | GABRD has 4 transmembrane segments and a cell membrane assignment (UniProt O14764 topology). Interpret membrane-associated signal alongside HPA's observed cytoplasmic neuronal and synaptic staining; the latter does not make an exclusively nuclear pattern expected (HPA: tissue IHC). |
| Tissue and cell distribution | Cerebellar granular cells are High; caudate and hippocampal neuronal cells and selected intestinal endocrine cells are Medium (HPA: tissue IHC). Cerebral cortical neuronal cells are Low, so a uniformly strong signal across brain regions is not the supplied reference pattern (HPA: tissue IHC). |
| Validation limits | The listed antibody HPA044371 is IHC Enhanced (HPA: antibody validation). HPA nevertheless reports medium staining/RNA consistency and presumed off-target binding that was disregarded; use cell type, location and controls together rather than treating intensity alone as proof (HPA: tissue IHC reliability). |
| Mature protein and epitope position | UniProt annotates a signal peptide at residues 1–24 and the mature chain at 25–452 (UniProt O14764 processing). Epitope position is not supplied, so these annotations cannot predict how this catalog antibody will stain a paraffin section. |
| Glycosylation and retrieval | UniProt annotates glycosylation sites at residues 103 and 106 (UniProt O14764). Their effect on IHC staining is unreported here; antigen retrieval may be assessed as general paraffin-section practice, without assuming a GABRD-specific retrieval requirement (general IHC practice). |
| Situation | Likely cause | Next action |
|---|---|---|
| Cerebellar granular cells are blank while the counterstain is visible. | The result conflicts with the reported High granular-cell staining (HPA: tissue IHC); counterstaining alone does not verify antigen detection (general IHC practice). | Check tissue identity and preservation, the positive-control section, primary-antibody application and detection steps; review retrieval as a general IHC variable without claiming a GABRD-specific fixation effect (general IHC practice). |
| Signal is nuclear rather than cytoplasmic/membranous. | Nuclear localization is unsupported by the supplied membrane topology and tissue observations (UniProt O14764 topology; HPA: tissue IHC). | Compare the staining with cell morphology and a no-primary control; reassess specificity if nuclei remain the dominant positive structure (general IHC practice). |
| Many unrelated cell types show similarly strong staining. | The pattern may reflect nonspecific binding or endogenous detection activity, especially where it exceeds HPA's reported cell distribution (HPA: tissue IHC; general IHC practice). | Compare a no-primary control and a tissue/cell type reported as not detected, then review blocking and detection chemistry (HPA: tissue IHC; general IHC practice). |
| The section has diffuse staining that masks cell boundaries. | Widespread deposits cannot be assigned confidently to the neuronal and synaptic profile (HPA: tissue IHC); background from staining reagents is possible (general IHC practice). | Check the no-primary control, background blocking and chromogen development; score only signal that remains localizable to identifiable cells (general IHC practice). |
| A negative-control tissue shows focal staining. | HPA reports no detection in adipocytes of adipose tissue and several other listed cell populations (HPA: tissue IHC); focal signal may be background or an unverified cell-specific finding. | Identify the stained cell type, compare its no-primary control and avoid calling it GABRD solely from a focal deposit (general IHC practice). |
| Does an ICC-IF Golgi or vesicle image define the IHC-P positive pattern? | HPA lists Golgi apparatus and vesicles as uncertain ICC-IF locations, and rates HPA044371 ICC as Uncertain (HPA: subcellular; HPA: antibody validation). | Use the tissue IHC neuronal/cytoplasmic-membrane observations to interpret paraffin sections; treat ICC-IF localization as uncertain and consult its separate guide for that application (HPA: tissue IHC; HPA: subcellular). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data. Presumed off target binding observed and disregarded.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Cerebellum | Granular cells - cytoplasm/membrane | High | Protein (IHC) | HPA → |
| Caudate | Neuronal cells | Medium | Protein (IHC) | HPA → |
| Colon | Endocrine cells | Medium | Protein (IHC) | HPA → |
| Duodenum | Endocrine cells | Medium | Protein (IHC) | HPA → |
| Hippocampus | Neuronal cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Endocrine cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
Use the catalog antibody’s paraffin-section evidence as a starting point, then assess GABRD staining against cell type, compartment and controls.
A30688 has real IHC data from paraffin-embedded human tonsil (IHC image caption). IF/ICC are listed applications, with human, mouse, and rat reactivity (catalog applications/reactivity).
A30688 will render with an IHC figure from paraffin-embedded human tonsil (IHC image caption). A30688 lists IHC, IF, and ICC applications and human, mouse, and rat reactivity; no IF figure is supplied (catalog applications/reactivity; IF image alts).
Which to pick: Choose A30688 for paraffin-section tissue IHC: its own caption reports human tonsil, Tris-EDTA pH 9.0 retrieval, and a 1:200 primary dilution overnight at 4°C (IHC image caption). For IF/ICC, A30688 lists both applications, although no IF figure is supplied (catalog applications; IF image alts). It is the listed cross-species option because the polyclonal antibody lists human, mouse, and rat reactivity; its paraffin-only caption does not report the fixative (catalog dilution_raw/reactivity; IHC image caption).