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- Table of Contents
Plan paraffin-section NQO1 IHC around the cytoplasmic staining seen in most tissues (HPA tissue IHC). This guide covers cell-type controls (HPA tissue IHC) and the catalog antibody’s 2–5 μg/ml IHC range (datasheet A00494-2).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in most tissues (HPA tissue IHC) | |
| Staining pattern | High cytoplasmic staining in gallbladder glandular cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A00494-2) | |
| Positive control | Gallbladder+4 more · see all | |
| Negative control | Bone marrow+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Staining varies by cell type; marrow hematopoietic cells are undetected (HPA tissue IHC) | |
| Regulation | Expression regulation unreported (UniProt) | |
| Isoform / epitope | 3 isoforms; verify epitope coverage; no transmembrane segment (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet: A00494-2) is presented alongside three published NQO1 IHC protocols (PMC3743184; PMC6433262; PMC2377272).
| Sample | Paraffin-embedded human colon cancer tissue; fixative not specified (datasheet A00494-2) |
| Fixation | Image fixative and duration unreported (datasheet A00494-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A00494-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A00494-2) |
| Primary antibody | Rabbit anti-NQO1, 2-5 μg/ml (datasheet A00494-2) |
| Primary incubation | Overnight at 4 °C (datasheet A00494-2) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A00494-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | NQO1-positive staining in glandular cells of gallbladder (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in most tissues. No signal in the no-primary control. |
NQO1 is a cytosolic protein with no transmembrane segment (UniProt P15559). In paraffin-section IHC, expect predominantly cytoplasmic staining in many tissues (HPA tissue IHC: cytoplasmic expression in most tissues). Gallbladder glandular cells and kidney glomerular cells are useful high-staining examples (HPA tissue IHC: High). The tissue pattern has Enhanced reliability because antibody staining is consistent with RNA expression (HPA tissue IHC: Enhanced).
| Distinct cytoplasmic chromogen in gallbladder glandular cells or kidney glomerular cells. | This matches two High-staining cell populations (HPA tissue IHC: Gallbladder and Kidney, High) and the expected cytosolic location (UniProt P15559; HPA subcellular: Cytosol). Compare cells within the same section before assigning a tissue-wide score (general IHC practice). |
| Predominantly nuclear, membranous, or extracellular staining replaces cytoplasmic staining. | These compartments conflict with the annotated cytosolic location and lack of a transmembrane segment (UniProt P15559; HPA subcellular: Cytosol). Treat the pattern as suspect; inspect morphology, detection controls, and the antibody's IHC validation before interpreting it as NQO1 (general IHC practice). |
| Strong staining appears in cells listed as undetected, such as bone-marrow hematopoietic cells. | HPA reports NQO1 as Not detected in those cells (HPA tissue IHC: Bone marrow, hematopoietic cells). Cross-reactivity or endogenous chromogen-generating activity is possible (general IHC practice); verify the stained cell identity and use an appropriate detection control. |
| Chromogen coats the section broadly, obscuring boundaries between cells. | Uniform haze cannot establish the cell-restricted cytoplasmic pattern reported by HPA (HPA tissue IHC: cytoplasmic expression in most tissues). Review the no-primary control, blocking, washes, and chromogen development; these checks address background in chromogenic IHC generally (general IHC practice). |
| No staining appears in gallbladder glandular cells or kidney glomerular cells. | An absent signal conflicts with HPA's High staining in those specific cells (HPA tissue IHC: Gallbladder and Kidney, High). Confirm that the expected cells are present, then review the catalog antibody's IHC-P instructions and the run controls before calling the specimen negative (general IHC practice). |
| Cell-specific reference pattern | Use the named cell population, not the organ name alone: stomach glandular cells are Medium, while liver cholangiocytes are Not detected (HPA tissue IHC). A mixed-cell section can therefore contain staining and unstained cells without contradicting the reference. |
| Antibody validation | Two listed antibodies have Enhanced IHC status (HPA antibodies: HPA007308 and CAB012421). HPA's tissue profile also has Enhanced reliability, indicating agreement between staining and RNA data (HPA tissue IHC); neither designation validates every compartment or every specimen. |
| Isoforms and antigen scope | UniProt lists 3 NQO1 isoforms (UniProt P15559). The supplied record does not locate the catalog antibody's epitope or establish which isoforms it detects, so do not explain a discrepant IHC pattern by isoform preference without antibody-specific evidence. |
| IF/ICC cross-check? | HPA ICC-IF reports an enhanced cytosolic location and lists images from A-431, U-251MG, and U2OS cells (HPA subcellular: Cytosol, enhanced). This supports the compartment call; it does not establish an IHC-P retrieval condition or tissue intensity. |
| Detection chemistry | Endogenous enzyme activity can create chromogen independent of primary-antibody binding (general chromogenic IHC practice). Include a no-primary control and check the detection system's recommended blocking steps; the supplied HPA and UniProt records do not identify an NQO1-specific interference. |
| Situation | Likely cause | Next action |
|---|---|---|
| Expected High-staining cells are blank. | The expected cell population may be absent from the section, or the IHC run may have failed; HPA reports High staining specifically in gallbladder glandular and kidney glomerular cells (HPA tissue IHC). | Locate those cells on the counterstained section and check a suitable positive control. Review the catalog antibody's IHC-P instructions and the run record before changing conditions (general IHC practice). |
| Staining is mainly nuclear. | A nuclear-dominant pattern conflicts with cytosolic NQO1 (UniProt P15559; HPA subcellular: Cytosol). | Check the no-primary control and cellular boundaries, then compare with the antibody's IHC validation images where available (general IHC practice). Do not score nuclear color as the expected NQO1 pattern. |
| An HPA-undetected cell population stains strongly. | Unexpected primary binding or detection background is possible (general IHC practice); HPA lists bone-marrow hematopoietic cells as Not detected (HPA tissue IHC). | Confirm cell identity and inspect a no-primary control. Record the result as a discrepancy until the stain can be distinguished from background (general IHC practice). |
| Every cell and empty area looks brown. | Widespread color obscures HPA's cytoplasmic tissue pattern (HPA tissue IHC); excess chromogen development or detection background is possible (general IHC practice). | Compare the no-primary control, inspect washes and detection steps, and adjust development within the detection system's instructions (general IHC practice). |
| A presumed negative organ contains positive cells. | HPA's negative calls can be cell-specific: liver cholangiocytes are Not detected, while the payload does not label every liver cell negative (HPA tissue IHC). | Identify and score the actual stained cell type before comparing with HPA. Avoid treating a cell-specific Not detected entry as a whole-organ negative control (HPA tissue IHC). |
| Bronchial cilia stain, but cell bodies are less conspicuous. | HPA reports Medium staining in bronchial ciliated cells at the cilia axoneme (HPA tissue IHC), an exception to its broad cytoplasmic tissue summary. | Document the ciliary location separately and compare it with the bronchus reference. Do not force this observation into a uniform cell-body score (HPA tissue IHC). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — High consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Gallbladder | Glandular cells | High | Protein (IHC) | HPA → |
| Kidney | Cells in glomeruli | High | Protein (IHC) | HPA → |
| Stomach | Glandular cells | Medium | Protein (IHC) | HPA → |
| Adipose tissue | Adipocytes | Medium | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | Not detected | Protein (IHC) | HPA → |
| Liver | Cholangiocytes | Not detected | Protein (IHC) | HPA → |
| Lymph node | Germinal center cells | Not detected | Protein (IHC) | HPA → |
| Ovary | Follicle cells | Not detected | Protein (IHC) | HPA → |
Use the cytosolic pattern expected for NQO1 to assess staining, while checking each cell population separately (UniProt P15559; HPA tissue IHC).
Catalog antibodies have IHC images from human colon and ovarian cancers, mouse stomach, and human, mouse and rat kidneys (IHC image captions); IF images show HeLa and MCF-7 cells (IF image captions).
A00494-2 has paraffin section IHC images from human colon and ovarian cancers and an IF image from HeLa cells (A00494-2 image captions); M00494 has a paraffin section IHC image from mouse stomach and an IF image from MCF-7 cells (M00494 image captions). M00494-3 has IHC images from human, mouse and rat kidneys, while IF is listed as an application without an IF image (M00494-3 catalog and image captions).
Which to pick: For human paraffin section IHC, choose A00494-2: its captions document EDTA retrieval at pH 8.0 and 2 μg/ml primary antibody (A00494-2 IHC image captions). For IF/ICC, A00494-2 has both applications listed and an IF image from HeLa cells (A00494-2 catalog and IF image caption). For IHC across human, mouse and rat, M00494-3 has kidney images from all three species; M00494 also lists all three species, but its IHC image shows mouse stomach only (M00494-3 and M00494 catalog and IHC image captions). The IHC captions describe paraffin sections but do not report the fixative (IHC image captions).