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- Table of Contents
Plan chromogenic TLN1 IHC in paraffin sections using the cytoplasmic tissue pattern and cell type staining as references (HPA tissue IHC). This guide covers fixation consistency, the catalog antibody's IHC conditions, and controls for interpreting the signal.
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in tissue sections (HPA tissue IHC) | |
| Staining pattern | General cytoplasmic staining; high in breast glandular cells (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A02859-1) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Heart muscle |
| Fixation | Keep fixation consistent across paraffin sections. (standard IHC practice; not target-specific) | |
| Caveat | Staining varies by cell type; cardiomyocytes are not detected (HPA tissue IHC) | |
| Regulation | Expression varies by tissue (HPA tissue IHC) | |
| Isoform / epitope | 2 isoforms; epitope coverage needs mapping (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet: A02859-1) is accompanied by published TLN1 protocols for glioma and breast tissues (PMC12903198; PMC8937232).
| Sample | Paraffin-embedded human Lung cancer tissue; fixative not specified (datasheet A02859-1) |
| Fixation | Image fixative and duration unreported (datasheet A02859-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet A02859-1) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A02859-1) |
| Primary antibody | Rabbit anti-TLN1, 2μg/ml (datasheet A02859-1) |
| Primary incubation | Overnight at 4 °C (datasheet A02859-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A02859-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | TLN1-positive staining in lymphoid tissue of appendix (HPA tissue IHC: High). HPA tissue profile: General cytoplasmic expression. No signal in the no-primary control. |
TLN1 should appear mainly as cytoplasmic staining in positive cells, with signal near cell–matrix contacts where resolution permits (HPA: general cytoplasmic expression; UniProt Q9Y490: focal adhesions). High staining is reported in several epithelial and hematopoietic cell populations (HPA: tissue IHC). TLN1 has no transmembrane segment (UniProt Q9Y490: topology). HPA rates its tissue IHC profile Supported, with medium consistency between staining and RNA expression (HPA: tissue IHC reliability).
| Cytoplasmic stain in breast glandular cells, bronchial respiratory epithelial cells, or bone marrow hematopoietic cells. | This matches reported High staining in those cell populations (HPA: tissue IHC). A contact-associated accent can fit TLN1's focal adhesion localization (UniProt Q9Y490: subcellular location), but routine chromogenic sections may not resolve individual adhesions (general IHC practice). |
| Signal appears predominantly nuclear, with little cytoplasmic staining in otherwise positive cells. | A predominantly nuclear pattern conflicts with the reported general cytoplasmic IHC profile and cytosolic localization (HPA: tissue IHC; HPA: subcellular ICC-IF). Consider nonspecific staining or a reading artifact; nuclear signal alone does not establish TLN1 detection. |
| A cell population stains strongly where the expected population is unstained. | Compare the named cells, not the tissue alone: cardiomyocytes were Not detected, whereas bone marrow hematopoietic cells were High (HPA: tissue IHC). An unexpected cell pattern warrants checks for cross-reactivity or endogenous detection activity (general IHC practice); it is not proof of either. |
| Diffuse color covers the section, including spaces outside identifiable cells. | This obscures the cell-specific cytoplasmic pattern reported for TLN1 (HPA: tissue IHC). Background can arise from detection reagents, insufficient blocking or washing, or excess primary antibody (general IHC practice). Interpret cell-specific staining only after that background is controlled. |
| No staining appears in a known-positive cell population on the same run. | Absence in cells reported High, such as appendix lymphoid tissue cells, raises a run-level concern (HPA: tissue IHC). Check tissue preservation, retrieval conditions, primary antibody use, and detection controls (general IHC practice). A negative run cannot establish TLN1 absence. |
| Cell population and reference tissue | HPA reports High staining in appendix lymphoid tissue cells and breast glandular cells, Low in prostate glandular cells, and Not detected in cardiomyocytes (HPA: tissue IHC). Score the named cell population rather than assigning one intensity to an entire organ. |
| Subcellular interpretation | TLN1 is a cytoskeletal protein at focal adhesions and other contact regions, with no transmembrane segment (UniProt Q9Y490: function, location, topology). Membrane-adjacent accent can be compatible with TLN1; a membrane-only interpretation should be checked against the cytoplasmic IHC profile (HPA: tissue IHC). |
| Antibody evidence | HPA lists IHC as Supported for HPA004748 and CAB002006 (HPA: antibody validation). This supports using their reported patterns as comparisons, but HPA rates overall tissue IHC consistency with RNA as Medium (HPA: tissue IHC reliability). |
| Isoforms and epitope coverage | UniProt lists two TLN1 isoforms (UniProt Q9Y490: isoforms). The supplied evidence gives no antibody epitope or isoform-specific staining result, so neither isoform coverage nor a reason for a discrepant stain can be inferred from that listing. |
| IF/ICC: where should TLN1 appear? | HPA reports supported localization to cytosol and focal adhesion sites, with additional plasma membrane and centriolar satellite localization (HPA: subcellular ICC-IF). These are IF/ICC observations; use the tissue IHC profile to judge paraffin-section staining (HPA: tissue IHC). |
| Situation | Likely cause | Next action |
|---|---|---|
| Positive-control cells show no chromogenic signal. | A run or detection problem is possible when cells reported High are blank (HPA: tissue IHC; general IHC practice). | Verify the positive control's named cell population, primary antibody application, detection reagents, and retrieval steps before interpreting study sections (general IHC practice). No TLN1-specific retrieval condition is established by the supplied evidence. |
| Cardiomyocytes stain strongly. | That differs from HPA's Not detected result for cardiomyocytes (HPA: tissue IHC); cell misidentification, nonspecific staining, or endogenous detection activity is possible (general IHC practice). | Confirm the stained cells on the counterstained section and inspect a no-primary control for detection background (general IHC practice). Treat the HPA result as a reference observation, not a universal exclusion rule. |
| The whole section has hazy color. | Diffuse background may conceal TLN1's reported cytoplasmic pattern (HPA: tissue IHC). Excess primary antibody or inadequate blocking or washing can contribute (general IHC practice). | Compare a no-primary control, review blocking and wash steps, and optimize primary antibody concentration using the catalog antibody's IHC-P instructions (general IHC practice). Do not score haze as cellular signal. |
| Only nuclei appear positive. | A nuclear-only result does not fit the reported cytoplasmic IHC profile or supported cytosolic ICC-IF localization (HPA: tissue IHC; HPA: subcellular ICC-IF). | Recheck cell boundaries and counterstain, then compare positive and no-primary controls (general IHC practice). Withhold a TLN1-positive call until a credible cellular pattern is present. |
| A focal adhesion pattern is not visibly punctate in IHC. | TLN1 localizes to focal adhesions (UniProt Q9Y490: subcellular location), but section geometry and chromogenic resolution can obscure small structures (general IHC practice). | Judge identifiable cells for the expected cytoplasmic pattern and appropriate reference intensity (HPA: tissue IHC). Do not require visible individual adhesions for a positive paraffin-section call. |
| A low-staining tissue seems negative beside a strong control. | Cell populations vary: prostate glandular cells are Low while breast glandular cells are High in HPA tissue IHC (HPA: tissue IHC). | Compare like cell populations and the same-run control before changing the score. Record weak but cellular cytoplasmic staining separately from background (HPA: tissue IHC; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Lymphoid tissue | High | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | High | Protein (IHC) | HPA → |
| Breast | Glandular cells | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Cerebellum | Granular cells - cytoplasm/membrane | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Heart muscle | Cardiomyocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot TLN1 staining in paraffin sections by checking retrieval, cell compartment, controls, and scoring before interpreting differences between samples.
TLN1 staining is shown in human and mouse paraffin sections (catalog IHC captions) and HeLa cells by IF/ICC (A02859-2 IF caption).
A02859-1 has IHC images from human lung cancer, intestinal cancer and tonsil, plus mouse small intestine (A02859-1 IHC captions). A02859-2 has IHC images from human bladder urothelial carcinoma, lung cancer, tonsil and testicular germ cell tumor, plus IF/ICC data from HeLa cells (A02859-2 IHC and IF captions).
Which to pick: For tissue IHC, choose A02859-1 when using citrate pH 6 retrieval for paraffin sections (A02859-1 IHC captions); choose A02859-2 when using citrate pH 6 retrieval for paraffin sections (A02859-2 IHC captions). For IF/ICC, choose A02859-2, which lists both applications and has a HeLa cell IF image (A02859-2 applications and IF caption). Both list human, mouse and rat reactivity for cross-species planning (catalog reactivity); neither IHC image caption reports the tissue fixative (catalog IHC captions).