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- Table of Contents
Plan chromogenic IHC on paraffin sections for TLN2 using its reported cytoplasmic tissue pattern (HPA tissue IHC). The guide covers tissue selection, staining controls and interpretation, with the reported medium consistency between antibody staining and RNA expression in mind (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in positive tissue cells (HPA tissue IHC) | |
| Staining pattern | Cytoplasm in neurons, cardiomyocytes and select renal tubules (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet PB9961) | |
| Positive control | Caudate+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific). Selected-image fixative and duration unreported (datasheet PB9961); verify before use. | |
| Caveat | Staining–RNA consistency is medium; verify with controls (HPA tissue IHC) | |
| Regulation | No expression regulation annotated (UniProt) | |
| Isoform / epitope | No isoforms; one chain with no extracellular domain (UniProt) |
The catalog antibody’s IHC-P protocol is paired with one published TLN2 protocol for paraffin-embedded clear cell renal cell carcinoma tissue (PMC8824820).
| Sample | Paraffin-embedded mouse intestine tissue; fixative not specified (datasheet PB9961) |
| Fixation | Image fixative and duration unreported (datasheet PB9961); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet PB9961); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PB9961) |
| Primary antibody | Rabbit anti-TLN2, 0.5-1μg/ml (datasheet PB9961) |
| Primary incubation | Overnight at 4 °C (datasheet PB9961) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet PB9961) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | TLN2-positive staining in neuronal cells of caudate (HPA tissue IHC: Medium). HPA tissue profile: Cytoplasmic expression in neuronal cells, cardiac myocytes, and in subset of renal tubules and cells in the seminiferous ducts. No signal in the no-primary control. |
TLN2 is a cytoplasmic protein associated with focal adhesions and the cytoskeleton; it has no transmembrane segment (UniProt Q9Y4G6). In tissue IHC, expect staining in neuronal cells, cardiomyocytes, selected renal tubules and cells in seminiferous ducts (HPA tissue IHC). HPA rates its tissue staining “Enhanced,” with medium agreement between staining and RNA data; external verification is pending (HPA tissue IHC).
| Cytoplasmic staining in cardiomyocytes or neuronal cells, or along proximal-tubule microvilli. | These are reported positive sites, generally at medium intensity (HPA tissue IHC). Score the named cell population and compartment; surrounding tissue need not stain uniformly (HPA tissue IHC). |
| Predominantly nuclear staining, with little staining in the expected cytoplasmic sites. | A nuclear-dominant pattern conflicts with TLN2’s reported localization (UniProt Q9Y4G6; HPA subcellular). Check the counterstain and detection controls before interpreting it as TLN2 signal (general IHC practice). |
| Strong staining in adipocytes or bone-marrow hematopoietic cells. | HPA reports TLN2 as not detected in these cell populations (HPA tissue IHC). Treat the result as suspect and assess cross-reactivity or endogenous detection activity; an HPA-negative result is not proof that every specimen must be negative (general IHC practice). |
| Diffuse color across cells and extracellular areas, without cell-specific structure. | This lacks the reported cytoplasmic and cell-specific pattern (HPA tissue IHC). Review background and detection controls before scoring; diffuse color alone does not establish TLN2 expression (general IHC practice). |
| No staining in cardiomyocytes or neuronal cells on an otherwise interpretable section. | Those populations are reported positive at medium intensity (HPA tissue IHC). A negative slide may reflect assay performance or specimen variation; check controls before concluding that TLN2 is absent (general IHC practice). |
| Cell compartment and structure | TLN2 links integrins to the actin cytoskeleton at focal adhesions (UniProt Q9Y4G6). HPA tissue IHC describes cytoplasmic staining, including proximal-tubule microvilli; neither source predicts a nuclear-dominant IHC pattern. |
| Choice of tissue and cells for interpretation | HPA reports medium staining in neurons, cardiomyocytes, proximal-tubule microvilli and spermatogonia, while several other specified cell populations are not detected (HPA tissue IHC). Compare named cells rather than judging whole-section color. |
| Strength of tissue evidence | HPA labels two antibodies IHC “Enhanced” (HPA antibodies), but its tissue profile has medium staining–RNA consistency and awaits external verification (HPA tissue IHC). Use the reported pattern as a guide, with an assay control. |
| Protein architecture and epitope limits | UniProt lists one TLN2 chain, no signal peptide, no propeptide and no transmembrane segment (UniProt Q9Y4G6). The payload gives no antibody epitope or target-specific retrieval response, so these annotations cannot specify retrieval conditions. |
| IF/ICC Q&A: What localization can serve as a separate cross-check? | HPA supports cytosol and focal-adhesion-site localization in ICC-IF (HPA subcellular). This can inform localization interpretation, but it does not establish an IF protocol or replace the tissue IHC pattern. |
| Situation | Likely cause | Next action |
|---|---|---|
| A reported positive tissue shows no convincing stain. | An uninformative assay or specimen could obscure the reported medium signal (HPA tissue IHC; general IHC practice). | Confirm that a positive control stained, then review antibody and chromogenic detection steps. Reassess the named cell population before calling the specimen negative (general IHC practice). |
| Color is concentrated in nuclei. | Nuclear-dominant signal conflicts with reported cytoplasmic and focal-adhesion localization (UniProt Q9Y4G6; HPA subcellular). | Check counterstain interpretation, a no-primary control and detection background; score TLN2 only where the cell and compartment pattern is credible (general IHC practice). |
| Adipocytes or bone-marrow hematopoietic cells stain strongly. | Those populations are listed as not detected (HPA tissue IHC); cross-reactivity or endogenous detection activity may explain unexpected color (general IHC practice). | Compare a no-primary control and a reported positive population on the same run. Investigate the detection system before treating unexpected staining as TLN2 (general IHC practice). |
| The slide has broad, diffuse brown background. | Color outside interpretable cell boundaries can interfere with the cell-specific pattern reported by HPA (HPA tissue IHC; general IHC practice). | Inspect no-primary and detection controls, then review blocking, washes and detection development using the assay’s standard workflow (general IHC practice). |
| Kidney staining appears patchy across tubules. | HPA describes staining in a subset of renal tubules and specifically reports proximal-tubule microvilli at medium intensity (HPA tissue IHC). | Identify the tubule population and its staining compartment before judging the slide; do not require every tubule to stain (HPA tissue IHC). |
| ICC-IF shows focal-adhesion sites, but tissue IHC looks broadly cytoplasmic. | Both observations fit their respective reports: supported focal-adhesion and cytosol localization in ICC-IF, and cytoplasmic tissue staining (HPA subcellular; HPA tissue IHC). | Evaluate each assay against its own reported pattern and controls; do not require paraffin-section chromogenic IHC to resolve discrete focal-adhesion sites (general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data. Pending external verification.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Caudate | Neuronal cells | Medium | Protein (IHC) | HPA → |
| Cerebellum | Purkinje cells - cytoplasm/membrane | Medium | Protein (IHC) | HPA → |
| Cerebral cortex | Neuronal cells | Medium | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | Medium | Protein (IHC) | HPA → |
| Kidney | Proximal tubules (microvilli) | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot TLN2 staining in paraffin sections by checking retrieval, compartment, cell type, and controls before comparing signal across samples.
The IHC-validated TLN2 antibody has paraffin-section images from mouse and rat intestine and human intestinal cancer tissue (PB9961 image captions). No IF data are supplied (PB9961 catalog).
PB9961 is listed for IHC in human, mouse and rat samples (PB9961 catalog). Its IHC images show paraffin sections of mouse and rat intestine and human intestinal cancer tissue (PB9961 image captions).
Which to pick: Choose PB9961 for tissue IHC across human, mouse and rat samples (PB9961 catalog); its images support paraffin sections, and the fixative is unreported (PB9961 image captions). No SKU in this payload lists IF/ICC as an application, so there is no catalog-supported IF/ICC pick (PB9961 catalog).