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- Table of Contents
Plan TXN2 paraffin-section IHC around granular cytoplasmic tissue staining (HPA tissue IHC) and mitochondrial localization (UniProt). The guide uses the catalog antibody’s IHC evidence for staining conditions (datasheet A04586-1) and tissue evidence to interpret cell-type differences (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Granular cytoplasm in tissue (HPA tissue IHC); mitochondrion (UniProt) | |
| Staining pattern | Granular cytoplasmic staining across tissues (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A04586-1) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | Adipose tissue |
| Fixation | Keep fixation consistent across paraffin sections. (standard IHC practice; not target-specific) | |
| Caveat | Adipocytes show no detectable staining despite broad tissue staining (HPA tissue IHC) | |
| Regulation | Broad adult and fetal expression; regulation unreported (UniProt) | |
| Isoform / epitope | No annotated isoforms; mature chain spans aa 60–166 (UniProt) |
The catalog antibody protocol uses citrate pH 6 heat retrieval (datasheet A04586-1); the published heart tissue IHC protocol reports primary incubation and DAB detection (PMC13368523).
| Sample | Paraffin-embedded human intestinal cancer tissues; fixative not specified (datasheet A04586-1) |
| Fixation | Image fixative and duration unreported (datasheet A04586-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet A04586-1) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A04586-1) |
| Primary antibody | Rabbit anti-TXN2, 0.5-1μg/ml (datasheet A04586-1) |
| Primary incubation | Overnight at 4 °C (datasheet A04586-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A04586-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | TXN2-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: Granular cytoplasmic expression in all tissues. No signal in the no-primary control. |
TXN2 should appear as granular cytoplasmic staining consistent with mitochondria (HPA: tissue IHC profile; UniProt Q99757: mitochondrial localisation). High staining is reported in adrenal glandular cells, colon glandular cells, bronchial respiratory epithelial cells and bone marrow hematopoietic cells (HPA: High). HPA rates tissue IHC as Approved, with medium consistency between staining and RNA expression; interpret intensity alongside controls rather than treating every positive cell as conclusive (HPA: reliability description).
| Granular cytoplasmic signal in glandular or epithelial cells of an HPA high staining tissue (HPA: tissue IHC). | This fits the expected compartment and cell context (HPA: granular cytoplasmic profile; UniProt Q99757: mitochondrion). Assess intensity against nearby background and a matched control; morphology alone does not establish antibody specificity (standard IHC practice; HPA: Approved, medium consistency). |
| Predominantly nuclear, cell surface or uniformly diffuse signal, without a granular cytoplasmic component (HPA: expected tissue IHC profile). | The dominant compartment conflicts with mitochondrial TXN2 localisation (UniProt Q99757; HPA: ICC-IF main location). Consider nonspecific detection or an imaging artefact; repeat with appropriate controls before assigning the signal to TXN2 (standard IHC practice). |
| Strong staining in adipocytes, with little or no staining in an HPA high staining cell population on the same run (HPA: tissue IHC). | That distribution conflicts with adipocytes being not detected and the selected comparison population being High (HPA: tissue IHC). Check for cross-reactivity or endogenous chromogen activity using suitable controls (standard IHC practice). HPA's medium staining–RNA consistency limits conclusions from one section (HPA: reliability description). |
| Broad, even color across cells, stroma or empty areas that obscures cellular granules (HPA: expected granular cytoplasmic profile). | Diffuse background makes compartment scoring unreliable (standard IHC practice). Examine background in a control section and review blocking, washing and detection conditions (standard IHC practice); this appearance does not by itself identify a TXN2-specific cause. |
| No discernible signal in adrenal glandular cells or colon glandular cells (HPA: High in both populations). | An absent signal in a documented high staining population raises concern about assay performance (HPA: tissue IHC; standard IHC practice). Review section quality, antigen retrieval, antibody incubation and detection with controls (standard IHC practice); a single negative section does not overturn the HPA pattern. |
| Compartment: mitochondrion (UniProt Q99757; HPA: ICC-IF main location). | HPA describes tissue IHC as granular cytoplasmic, while ICC-IF places TXN2 mainly in mitochondria (HPA: tissue IHC; HPA: subcellular). Use those observations together when judging localisation; chromogenic granules alone cannot prove organelle identity (standard IHC practice). |
| Cell context: widespread expression with unequal observed intensity (UniProt Q99757: tissue specificity; HPA: tissue IHC). | HPA reports High staining in several glandular, epithelial and hematopoietic populations, Low in smooth muscle cells and skeletal myocytes, and Not detected in adipocytes (HPA: tissue IHC). Compare like cell types before interpreting an intensity difference. |
| Evidence strength: two listed antibodies have IHC Approved status (HPA: HPA000994 and CAB008681). | HPA describes medium consistency between antibody staining and RNA expression (HPA: reliability description). Treat a matching distribution as supportive, then use assay controls for the tested antibody; the supplied record does not assign an IHC Enhanced rating (HPA: antibody validation statuses). |
| Protein processing: the annotated thioredoxin chain spans residues 60–166 (UniProt Q99757). | The record identifies a mitochondrial protein without a transmembrane segment (UniProt Q99757). It gives no antibody epitope or target-specific retrieval sensitivity, so it cannot predict which retrieval condition exposes this antibody's binding site (UniProt Q99757 record; standard IHC practice). |
| Situation | Likely cause | Next action |
|---|---|---|
| Granular cytoplasmic staining is weak in an expected high staining population (HPA: tissue IHC). | Low signal can arise from assay conditions or section quality (standard IHC practice); the supplied sources do not establish a TXN2-specific fixation effect. | Compare a documented high staining control and review the catalog antibody's IHC-P instructions, retrieval conditions and detection controls (HPA: tissue IHC; standard IHC practice). |
| The whole section has diffuse color that masks granules (HPA: expected granular cytoplasmic profile). | Background may come from nonspecific reagent binding or endogenous detection activity (standard IHC practice). | Inspect a control without primary antibody, then review blocking, washing and chromogenic detection (standard IHC practice). Score localisation only where cellular detail remains visible. |
| Nuclei dominate the stain while cytoplasmic granules are absent (HPA: expected tissue IHC profile). | This pattern is inconsistent with the annotated mitochondrial location (UniProt Q99757; HPA: subcellular). | Check morphology and controls, then reassess antibody specificity and detection settings before calling the nuclear color TXN2 (standard IHC practice). |
| Adipocytes stain strongly while the selected positive control is weak (HPA: adipocytes Not detected; glandular cells in colon High). | The reversed distribution suggests nonspecific staining or an assay problem, although HPA reports medium staining–RNA consistency (HPA: tissue IHC; HPA: reliability description). | Compare sections processed together and inspect controls for cross-reactivity or endogenous activity (standard IHC practice); avoid declaring adipocytes a TXN2-positive population from that run. |
| A known high staining control is blank across repeated sections (HPA: tissue IHC). | Failure of retrieval, primary antibody incubation or detection could suppress the observed signal (standard IHC practice); no target-specific fixation cause is established here. | Verify that tissue and detection controls work, then review the catalog antibody's IHC-P workflow and repeat with a documented HPA high staining cell population (standard IHC practice; HPA: tissue IHC). |
| Q: What should an IF/ICC image show (HPA: subcellular ICC-IF)? | A: HPA reports TXN2 mainly in mitochondria, with an enhanced mitochondrial location; its listed antibodies have ICC Supported status (HPA: subcellular; HPA: antibody statuses). | Look for mitochondrial signal and compare with appropriate image controls (HPA: subcellular; standard IF practice). Use the separate IF/ICC guide for that application's workflow. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | High | Protein (IHC) | HPA → |
| Breast | Glandular cells | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Colon | Glandular cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
Use the catalog antibody’s paraffin-section protocol as the starting point, then judge staining against TXN2’s expected mitochondrial pattern and appropriate controls.
Anti-TXN2 antibodies have IHC images from human cancer tissues and rat brain, plus IF/ICC images from human cells (catalog image captions); the catalog lists human, mouse and rat reactivity (catalog reactivity).
A04586-1 has IHC images from human intestinal and mammary cancer sections and an IF/ICC image from U20S cells (A04586-1 image captions); M04586 has an IHC image from human colon cancer (M04586 IHC caption). M04586-1 and M04586-2 each have IHC images from human gastric and lung cancers and rat brain (respective IHC captions); both have HeLa IF/ICC images, while M04586-2 also has MCF7 and human intestinal cancer IF images (respective IF captions).
Which to pick: For tissue IHC, choose A04586-1 for a citrate pH 6 retrieval example (A04586-1 IHC caption) or M04586 for an EDTA pH 8 example (M04586 IHC caption); both captions show paraffin sections but leave the fixative unreported (respective IHC captions). For IF/ICC, M04586-2 offers HeLa and MCF7 cell images and a paraffin-section IF image (M04586-2 IF captions). For cross-species IHC planning, M04586-1 and M04586-2 each have a rat brain IHC image alongside human tissue images (respective IHC captions), and both list human, mouse and rat reactivity (catalog reactivity); their paraffin-section captions leave the fixative unreported (respective IHC captions).