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- Table of Contents
Plan chromogenic ADO IHC with the catalog antibody, using neuronal cells and lung macrophages as candidate positive controls (HPA tissue IHC). Assess cytoplasmic and extracellular staining with matched controls, and interpret intensity cautiously because staining and RNA expression have low agreement (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic and extracellular tissue staining (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic/extracellular positivity across several tissues (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet PB10032) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | Appendix+4 more · see all |
| Fixation | Keep tissue fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Staining has low agreement with RNA expression (HPA tissue IHC) | |
| Regulation | Low tissue specificity at RNA level (HPA tissue RNA) | |
| Isoform / epitope | No annotated isoforms or cleavage; epitope location unknown (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet: PB10032) with one published ADO tissue-microarray protocol (PMC11704412).
| Sample | Paraffin-embedded rat brain tissue; fixative not specified (datasheet PB10032) |
| Fixation | Image fixative and duration unreported (datasheet PB10032); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet PB10032); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PB10032) |
| Primary antibody | Rabbit anti-ADO, 2-5μg/ml (datasheet PB10032) |
| Primary incubation | Overnight at 4 °C (datasheet PB10032) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet PB10032) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | ADO-positive staining in glandular cells of adrenal gland (HPA tissue IHC: Medium). HPA tissue profile: Extracellular positivity and cytoplasmic expression in several tissues. No signal in the no-primary control. |
ADO staining is expected mainly in the cytoplasm of selected cells, with extracellular positivity also reported (HPA: tissue IHC profile). Medium staining is reported in lung macrophages, brain neurons, cardiomyocytes, and selected glandular and hematopoietic cells (HPA: tissue IHC). ADO has no annotated transmembrane segment (UniProt Q96SZ5). Treat this pattern as provisional: HPA rates the tissue staining Approved but reports low consistency with RNA expression and pending external verification (HPA: reliability).
| Cytoplasmic staining in lung macrophages or cortical neurons, with some extracellular staining. | This fits the reported compartment and cell patterns; both cell types have Medium staining (HPA: tissue IHC). Assess cellular staining separately from extracellular color so the latter does not inflate the count of positive cells (general IHC practice). |
| Strong nuclear-only or sharply membrane-dominant staining across many cells. | This diverges from the reported cytoplasmic and extracellular profile (HPA: tissue IHC). ADO has no annotated transmembrane segment, but topology alone cannot prove such staining is an artefact (UniProt Q96SZ5 topology). Review controls and antibody specificity before assigning it to ADO (general IHC practice). |
| Prominent staining in colon glandular cells or bronchial basal cells. | Both are reported as Not detected (HPA: tissue IHC). Consider cross-reactivity or endogenous chromogenic activity, especially if the negative reagent control also develops color (general IHC practice). An unexpected positive result needs confirmation because the HPA tissue profile has low RNA concordance (HPA: reliability). |
| Uniform pale color over cells, stroma, and slide background. | A broad haze obscures the reported cell and compartment pattern (HPA: tissue IHC profile). Background may arise from nonspecific binding, incomplete blocking, or detection chemistry (general IHC practice); it cannot establish widespread ADO expression. |
| No staining in lung macrophages or heart cardiomyocytes. | These are Medium-staining examples, so an absent signal merits a run-level check (HPA: tissue IHC). Examine the positive control, primary-antibody conditions, retrieval, and detection reagents (general IHC practice). A failed run cannot be interpreted as tissue-specific absence. |
| Tissue and cell selection | Lung macrophages, cortical neurons, heart cardiomyocytes, and bone-marrow hematopoietic cells are Medium examples (HPA: tissue IHC). Colon glandular and bronchial basal cells are Not detected examples (HPA: tissue IHC). Compare the named cell population, not the whole section (general IHC practice). |
| Interpretive confidence | The tissue profile is Approved but has low antibody-staining/RNA consistency and awaits external verification (HPA: reliability). Concordance with the reported pattern is useful, yet it is not independent proof of target specificity. |
| Antibody evidence | HPA039194 and HPA040437 each have Approved IHC status (HPA: antibodies). Neither is listed as ICC-IF validated in the supplied antibody record (HPA: antibodies). Their status does not establish that every positive structure is ADO. |
| Topology and processing | ADO has no annotated transmembrane segment, signal peptide, propeptide, or glycosylation site; its annotated chain spans residues 1–270 (UniProt Q96SZ5). These annotations give no basis for a membrane-only pattern or a processing-dependent staining prediction. |
| Fixation and retrieval | Target-specific fixation sensitivity and antigen-retrieval conditions are unreported in the supplied UniProt and HPA records. Use a controlled retrieval comparison if the stain is weak (general IHC practice); do not infer an ADO-specific fixation effect. |
| IF/ICC: what pattern should be expected? | HPA provides no assigned ICC-IF location or cell-line images (HPA: subcellular record). Cytoplasmic IHC staining is a provisional comparison only (HPA: tissue IHC); it does not establish an IF/ICC localization or protocol. |
| Situation | Likely cause | Next action |
|---|---|---|
| Positive-control tissue is blank. | The run may have inadequate primary-antibody binding, retrieval, or chromogenic detection (general IHC practice); Medium staining is reported in lung macrophages and heart cardiomyocytes (HPA: tissue IHC). | Check section integrity and reagent controls, then compare retrieval and primary-antibody conditions one variable at a time (general IHC practice). Do not score other blank sections as ADO-negative until the control works. |
| A section shows mostly nuclear color. | Nuclear-only staining conflicts with the reported cytoplasmic and extracellular profile (HPA: tissue IHC). Counterstain or nonspecific signal may complicate interpretation (general IHC practice). | Inspect an unstained or negative reagent control, check counterstain intensity, and compare the expected positive cell population before scoring nuclear signal as ADO (general IHC practice). |
| Extracellular color overwhelms cell boundaries. | Some extracellular positivity is reported (HPA: tissue IHC profile), but excessive chromogen development or background can obscure cytoplasmic staining (general IHC practice). | Shorten chromogen development or adjust detection conditions with matched controls (general IHC practice). Record extracellular and cytoplasmic observations separately; do not count extracellular deposits as positive cells. |
| Colon glands or bronchial basal cells stain strongly. | These cell populations are reported as Not detected (HPA: tissue IHC). Cross-reactivity or endogenous detection activity is possible (general IHC practice). | Compare a negative reagent control and a reported Medium-staining population in the same run (HPA: tissue IHC; general IHC practice). Seek independent confirmation if the unexpected cell pattern persists, given HPA's low RNA concordance (HPA: reliability). |
| Color appears throughout the section, including acellular areas. | This does not resolve the selected cellular pattern reported by HPA (HPA: tissue IHC). Nonspecific binding, incomplete blocking, or excessive detection may contribute (general IHC practice). | Review blocking, washes, reagent controls, and chromogen time using the same slide set (general IHC practice). Reassess only distinct cellular staining after background is reduced. |
| An IF/ICC image disagrees with the IHC pattern. | HPA supplies no ICC-IF images or assigned subcellular location (HPA: subcellular record); the tissue IHC pattern cannot validate an IF/ICC result. | Assess IF/ICC with its own controls and guide (general IF practice). Keep the IHC call tied to the reported tissue and cell pattern (HPA: tissue IHC). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data. Pending external verification.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Medium | Protein (IHC) | HPA → |
| Caudate | Neuronal cells | Medium | Protein (IHC) | HPA → |
| Cerebral cortex | Neuronal cells | Medium | Protein (IHC) | HPA → |
| Gallbladder | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bronchus | Basal cells | Not detected | Protein (IHC) | HPA → |
| Cervix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Colon | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot ADO staining in paraffin sections using the catalog antibody’s tissue IHC conditions, then assess localisation and controls against the available tissue evidence.
PB10032 has paraffin-section IHC images from rat and mouse brain and an IF/ICC image from A549 cells (catalog image captions).
PB10032 is the sole listed SKU; its IHC images show paraffin sections of rat and mouse brain (PB10032 IHC captions). Its IF/ICC image shows A549 cells (PB10032 IF caption).
Which to pick: Choose PB10032 for paraffin-section tissue IHC in rat or mouse brain, supported by its own images; the fixative is unreported (PB10032 IHC captions). Choose PB10032 for IF/ICC in A549 cells, supported by its cell image (PB10032 IF caption). For cross-species planning, PB10032 lists Human, Mouse and Rat reactivity, but the supplied IHC images cover only rat and mouse (catalog reactivity; PB10032 IHC captions).