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Plan paraffin-section IRAK2 IHC around cytoplasmic and membranous staining, with kidney tubular cells as a medium-staining reference (HPA tissue IHC). Compare matched sections and interpret intensity cautiously because antibody staining has low consistency with RNA expression (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic and membranous tissue staining (HPA tissue IHC) | |
| Staining pattern | Several cell types show cytoplasmic and membranous staining (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A01559) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | Cerebellum+4 more · see all |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Antibody staining has low consistency with RNA data (HPA tissue IHC) | |
| Regulation | Expression induction is unreported (UniProt) | |
| Isoform / epitope | No annotated isoforms or cleavage; no transmembrane segment (UniProt) |
The catalog antibody has an IHC-P protocol (datasheet: A01559). The published workflows below describe IRAK2 staining of oral tumor sections and tissue microarrays (PMC8260692; PMC7707239).
| Sample | Paraffin-embedded rat liver tissue; fixative not specified (datasheet A01559) |
| Fixation | Image fixative and duration unreported (datasheet A01559); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A01559); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01559) |
| Primary antibody | Rabbit anti-IRAK2, 0.5-1μg/ml (datasheet A01559) |
| Primary incubation | Overnight at 4 °C (datasheet A01559) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A01559) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | IRAK2-positive staining in glandular cells of adrenal gland (HPA tissue IHC: Medium). HPA tissue profile: Cytoplasmic and membranous expression in several tissues. No signal in the no-primary control. |
For paraffin-section IHC, look for cytoplasmic and membranous IRAK2 staining, particularly in lung macrophages, kidney tubular cells, and bronchial respiratory epithelial cells (HPA tissue IHC). IRAK2 has no transmembrane segment (UniProt O43187 topology), so membranous staining does not establish that it spans the membrane. Treat the pattern as provisional: HPA rates tissue IHC reliability Uncertain because antibody staining and RNA expression have low consistency (HPA tissue IHC).
| Moderate cytoplasmic or membranous staining in lung macrophages, kidney tubular cells, or bronchial respiratory epithelium. | This resembles the reported IHC pattern and cell-specific Medium staining (HPA tissue IHC). Compare localization and cell identity together; the Uncertain reliability rating means resemblance alone cannot establish antibody specificity (HPA tissue IHC). |
| Strong nuclear-only staining, with little or no cytoplasmic or membranous staining in the expected cells. | Nuclear-only staining conflicts with HPA’s cytoplasmic and membranous tissue profile (HPA tissue IHC). Investigate nonspecific staining and slide-level artefacts before interpreting it as IRAK2; UniProt provides no subcellular annotation that would independently support a nuclear assignment (UniProt O43187). |
| Prominent staining in pancreatic exocrine glandular cells or cerebellar granular-layer cells. | These cell populations were Not detected by HPA tissue IHC (HPA tissue IHC). Consider antibody cross-reactivity or endogenous chromogenic activity as possible explanations (standard IHC practice). HPA’s Uncertain reliability prevents treating either negative population as an absolute exclusion (HPA tissue IHC). |
| Diffuse color across tissue, including areas without a recognizable cytoplasmic or membranous cell pattern. | A diffuse deposit is difficult to assign to IRAK2 because HPA describes a compartmental pattern in several tissues (HPA tissue IHC). Evaluate background from detection chemistry, blocking, washes, and counterstain before scoring cells (standard IHC practice). |
| No staining in lung macrophages or kidney tubular cells on a technically adequate slide. | Those populations showed Medium staining in HPA tissue IHC, so absence warrants a technical check (HPA tissue IHC). It does not prove target absence or antibody failure: HPA labels its IHC evidence Uncertain, and a single section may lack the relevant cells (HPA tissue IHC; standard IHC practice). |
| Compartment and topology | HPA reports cytoplasmic and membranous tissue staining (HPA tissue IHC). UniProt lists no transmembrane segment and no subcellular annotation (UniProt O43187); therefore, do not interpret a membrane-edge signal as proof of membrane insertion. |
| Cell-specific tissue choice | Lung macrophages, kidney tubular cells, and bronchial respiratory epithelial cells showed Medium staining; pancreatic exocrine glandular cells were Not detected (HPA tissue IHC). Choose comparison regions by cell population, since a tissue label alone can hide different cellular patterns. |
| Strength of the tissue evidence | HPA calls tissue IHC reliability Uncertain because antibody staining and RNA expression show low consistency, pending external verification (HPA tissue IHC). Interpret intensity and positive-versus-negative comparisons as provisional observations rather than validated cutoffs. |
| Antibody-level validation | HPA rates IHC for HPA050520 and CAB013483 Uncertain (HPA antibodies). Agreement with the published tissue pattern can guide review, but the supplied antibody record does not support calling either IHC result independently validated. |
| IF/ICC Q: Should paraffin-section IHC show vesicles? | A: HPA lists vesicles as the approved ICC-IF location and lists HPA050520 ICC as Approved (HPA subcellular; HPA antibodies). This is method-specific evidence; assess paraffin-section IHC against HPA’s cytoplasmic and membranous tissue profile (HPA tissue IHC). |
| UniProt expression versus HPA staining | UniProt reports expression in pancreas and several other tissues (UniProt O43187 tissue specificity), while HPA reports pancreatic exocrine glandular cells as Not detected by IHC (HPA tissue IHC). Keep tissue-level expression and cell-specific staining distinct when choosing controls. |
| Situation | Likely cause | Next action |
|---|---|---|
| The presumed positive region is blank. | The section may lack the relevant cell population, or staining may have failed; HPA positives remain provisional (HPA tissue IHC). | Confirm lung macrophages or kidney tubular cells are present, then check the run’s staining controls and detection steps before changing the biological interpretation (HPA tissue IHC; standard IHC practice). |
| All cells show similar diffuse chromogen. | Background from antibody or detection reagents can obscure the compartment pattern (standard IHC practice). | Review blocking and washes, inspect a no-primary control, and score only interpretable cell-associated color (standard IHC practice); compare with HPA’s cytoplasmic and membranous profile (HPA tissue IHC). |
| Color concentrates only in nuclei. | The location conflicts with HPA’s reported tissue profile; nonspecific staining or artefact is possible (HPA tissue IHC; standard IHC practice). | Inspect controls and morphology, then repeat with the same tissue and carefully compare cellular compartments; avoid calling nuclear-only staining an established IRAK2 pattern (HPA tissue IHC). |
| Pancreatic exocrine cells stain strongly. | HPA reports these cells as Not detected, although UniProt lists expression in pancreas (HPA tissue IHC; UniProt O43187). | Check for cross-reactivity and endogenous chromogenic activity with appropriate controls; interpret the discrepancy at the cell level and retain HPA’s Uncertain reliability caveat (standard IHC practice; HPA tissue IHC). |
| Apparent membrane staining dominates without discernible cytoplasm. | HPA allows a membranous component, but UniProt reports no transmembrane segment (HPA tissue IHC; UniProt O43187 topology). | Check whether color follows cell boundaries rather than section edges or deposits, and avoid inferring membrane insertion from chromogen distribution alone (standard IHC practice; UniProt O43187 topology). |
| ICC-IF shows puncta while IHC looks broader. | HPA assigns vesicles in ICC-IF but describes cytoplasmic and membranous staining in tissue IHC (HPA subcellular; HPA tissue IHC). | Judge each preparation against its own HPA observation; do not require vesicle-like puncta in paraffin-section IHC or use the ICC result to upgrade Uncertain tissue IHC reliability (HPA subcellular; HPA tissue IHC). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Uncertain — Low consistency between antibody staining and RNA expression data. Pending external verification.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Medium | Protein (IHC) | HPA → |
| Colon | Glandular cells | Medium | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | Medium | Protein (IHC) | HPA → |
| Gallbladder | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
| Endometrium | Cells in endometrial stroma | Not detected | Protein (IHC) | HPA → |
| Fallopian tube | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Hippocampus | Glial cells | Not detected | Protein (IHC) | HPA → |
| Ovary | Ovarian stroma cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot IRAK2 staining in paraffin sections using the catalog antibody’s IHC example and published tissue observations, while treating staining patterns as provisional.
Anti-IRAK2 antibodies have IHC images from rat liver and spleen, human kidney and lung cancer tissue, plus an IF image from A431 cells (A01559 and PA2236 image captions).
A01559 has paraffin-section IHC images from rat liver, rat spleen and human kidney, plus IF in A431 cells (A01559 image captions). PA2236 has paraffin-section IHC images from human lung cancer tissue and rat spleen (PA2236 image captions).
Which to pick: For tissue IHC, choose the SKU with an image matching your sample: A01559 for the documented liver or kidney examples, or PA2236 for the lung cancer example; both show rat spleen (A01559 and PA2236 IHC image captions). Choose A01559 for IF because it has an A431-cell IF image; PA2236 lists ICC but has no IF image (A01559 IF image caption; PA2236 catalog applications and image list). Both list human, mouse and rat reactivity, so the documented sample and application are the stronger selection criteria; clonality and the fixative used for the paraffin sections are unreported (A01559 and PA2236 catalog reactivity, clone fields and IHC image captions).