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- Table of Contents
Use lymph node non-germinal center cells as a high staining control for cytoplasmic PAK2 in paraffin sections (HPA tissue IHC). This guide covers chromogenic IHC planning with the catalog antibody’s 2–5 μg/mL range (datasheet A01419-4) and cleavage dependent interpretation (UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | General cytoplasmic staining (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic; high in lymph node non-germinal center cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A01419-4) | |
| Positive control | Lymph node+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation conditions consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Apoptotic p34 can enter nuclei; signal depends on epitope (UniProt) | |
| Regulation | Expression regulation unspecified (UniProt) | |
| Isoform / epitope | No annotated isoforms; cleavage changes p27/p34 epitope coverage (UniProt) |
The catalog antibody uses EDTA pH 8.0 retrieval (datasheet A01419-4). The published IHC protocols below cover pancreatic tissue, gastric tissue, and unspecified sections (PMC6425405; PMC3975179; PMC6802609).
| Sample | Paraffin-embedded human appendiceal adenocarcinoma tissue; fixative not specified (datasheet A01419-4) |
| Fixation | Image fixative and duration unreported (datasheet A01419-4); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A01419-4); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01419-4) |
| Primary antibody | Rabbit anti-PAK2, 2-5 μg/ml (datasheet A01419-4) |
| Primary incubation | Overnight at 4 °C (datasheet A01419-4) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A01419-4) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | PAK2-positive staining in non-germinal center cells of lymph node (HPA tissue IHC: High). HPA tissue profile: General cytoplasmic expression, most abundant in immune tissues. No signal in the no-primary control. |
PAK2 is broadly expressed and should give predominantly cytoplasmic staining in tissue IHC, with strong signal in lymph-node non-germinal-center cells and moderate signal in several glandular or respiratory epithelial populations (HPA tissue IHC). HPA rates the tissue staining Approved, with medium consistency against RNA data (HPA tissue IHC). Nuclear and perinuclear localization are also possible (UniProt Q13177 subcellular); PAK2 has no transmembrane segment (UniProt Q13177 topology).
| Strong cytoplasmic signal in lymph-node non-germinal-center cells, with weaker staining in surrounding populations. | This fits the reported high staining in those cells and the broader cytoplasmic tissue pattern (HPA tissue IHC). Compare cell populations within the section; uniform intensity across every cell would be less consistent with this example. |
| Moderate cytoplasmic staining in appendix, colon, duodenum, cervix, or gallbladder glandular cells, or bronchial respiratory epithelium. | Each listed population has medium staining in the supplied tissue observations (HPA tissue IHC). Intensity is relative to that tissue and assay; a moderate result does not imply equal abundance across organs. |
| Signal confined to extracellular material or an unrelated structure, without convincing cellular staining. | That distribution does not match the reported cytoplasmic tissue pattern or PAK2's intracellular locations (HPA tissue IHC; UniProt Q13177 subcellular). Consider deposit, detection artifact, or nonspecific binding before scoring it as PAK2. |
| Strong staining in a population reported as not detected, such as adipocytes or bone-marrow hematopoietic cells. | Treat this as unexpected for the cited examples (HPA tissue IHC). Check cell identification, cross-reactivity, and endogenous detection activity; an HPA not-detected call is an assay observation, not proof that expression is impossible. |
| No staining in lymph-node non-germinal-center cells while the counterstain and tissue morphology remain visible. | The missing signal conflicts with the high-staining example (HPA tissue IHC). First investigate the IHC assay and controls; an individual negative section cannot by itself establish loss of PAK2 expression. |
| Tissue and cell selection | Lymph-node non-germinal-center cells provide a high-staining reference; several glandular epithelia are medium, whereas adipocytes and selected glial populations are reported not detected (HPA tissue IHC). Choose and score the named cell population, rather than treating an entire organ as uniformly positive or negative. |
| Compartment | General tissue IHC expression is cytoplasmic (HPA tissue IHC). UniProt also lists nuclear, perinuclear, and membrane localization, with MYO18A-linked positioning of a PAK2 complex at the inner cell membrane (UniProt Q13177 subcellular). Nuclear staining therefore needs context, not automatic rejection. |
| Processing and epitope position | UniProt lists full-length PAK2 and cleavage products PAK-2p27 and PAK-2p34; the p34 fragment can translocate to the nucleus during apoptosis (UniProt Q13177 processing/function). The antibody epitope is not supplied, so this section cannot predict which forms it detects or attribute nuclear staining to cleavage. |
| IHC antibody evidence | One listed antibody has Approved IHC status; another has Supported ICC status but no listed IHC rating (HPA antibodies). Approved tissue staining has medium consistency with RNA data (HPA tissue IHC). These labels support cautious pattern comparison, not an independent claim of IHC Enhanced validation. |
| Antigen retrieval | Retrieval is a general paraffin-IHC optimization variable; the supplied sources give no PAK2-specific retrieval condition or fixation sensitivity. If signal is absent, assess retrieval alongside controls, without claiming that fixation masks a particular PAK2 epitope. |
| IF/ICC Q&A: should the IF image look cytoplasmic? | HPA ICC-IF reports mainly nucleoplasm and nuclear speckles, with additional cytosol and focal-adhesion staining (HPA subcellular). That differs in emphasis from the tissue IHC profile (HPA tissue IHC). Interpret each application against its own evidence; use the separate IF/ICC guide for its workflow. |
| Situation | Likely cause | Next action |
|---|---|---|
| No chromogenic signal in the lymph-node reference population. | The result misses a high-staining HPA example; assay failure or unsuitable detection remains possible (HPA tissue IHC). | Check the positive control, antibody application, retrieval, and detection steps as general IHC practice. Do not infer a PAK2-specific fixation effect from this result. |
| Color appears throughout the section, including blank spaces or extracellular material. | Diffuse deposition does not fit the cellular cytoplasmic tissue profile (HPA tissue IHC). Background from detection chemistry or inadequate washing is possible (general IHC practice). | Inspect reagent-only and no-primary controls; review blocking, wash steps, and development time as general IHC practice before assigning a PAK2 score. |
| Strong signal appears in adipocytes or bone-marrow hematopoietic cells. | Those cells are reported not detected in the supplied HPA tissue observations; cross-reactivity or endogenous detection activity may explain unexpected color (HPA tissue IHC). | Confirm cell identity and compare a no-primary control. Interpret any persistent cell-specific signal cautiously because the HPA result is an observed pattern, not an absolute biological negative. |
| Only nuclear staining is visible in a tissue IHC section. | The dominant HPA tissue pattern is cytoplasmic, but UniProt allows nuclear PAK2 and HPA ICC-IF emphasizes nuclear structures (HPA tissue IHC; UniProt Q13177 subcellular; HPA subcellular). | Check whether staining is cellular and reproducible in the expected positive population. Report the compartment explicitly; do not assign cleavage or artifact without supporting controls. |
| A glandular tissue stains faintly compared with lymph node. | Several named glandular populations are medium or low, while lymph-node non-germinal-center cells are high (HPA tissue IHC). | Score the specified cell population against an on-run positive reference. Avoid increasing development solely to force all tissues to match the lymph-node intensity. |
| A second antibody produces a different compartment pattern. | The listed antibodies have different application evidence: one Approved for IHC and one Supported for ICC, with no listed IHC rating for the latter (HPA antibodies). Epitope locations are unavailable. | Compare only within each antibody's validated application, review controls, and record the disagreement. Do not assume both antibodies recognize the same PAK2 forms. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Lymph node | Non-germinal center cells | High | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Medium | Protein (IHC) | HPA → |
| Cervix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Colon | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
| Cerebral cortex | Glial cells | Not detected | Protein (IHC) | HPA → |
Use the catalog antibody’s paraffin-section conditions as the IHC starting point, then judge PAK2 staining by cell type, compartment, and controls.
Anti-PAK2 IHC images cover human paraffin sections and mouse and rat tissue (catalog: A01419-4 IHC captions); IF images cover MCF-7 cells and mouse spleen cells (catalog: IF captions).
A01419-4 has IHC images from human appendiceal adenocarcinoma and lung cancer, plus mouse and rat skeletal muscle, and an IF image from MCF-7 cells (catalog: A01419-4 image captions). A01419-2 has an IHC image described as mouse kidney in the caption body and an IF image from mouse spleen cells (catalog: A01419-2 image captions).
Which to pick: For tissue IHC across human, mouse and rat samples, choose A01419-4: its captions show paraffin sections retrieved with EDTA at pH 8.0; the fixative is unreported (catalog: A01419-4 IHC captions). For IF/ICC, A01419-4 has an MCF-7 cell IF image, while A01419-2 has a mouse spleen cell IF image (catalog: IF captions). A01419-2 offers a mouse kidney paraffin IHC example with fixation and citrate retrieval at pH 6; its listed reactivity includes human, mouse and rat, but its stated IHC validation is in mouse samples (catalog: A01419-2 IHC caption and dilution notes). The selected A01419-4 tissue-IHC caption documents paraffin sections, but does not specify the fixative (selected-SKU IHC image A01419-4).