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- Table of Contents
Plan chromogenic PIK3CB staining in paraffin sections around the general cytoplasmic tissue pattern (HPA tissue IHC). This guide covers consistent fixation, catalog antibody dilution, detection and cell-level interpretation (standard IHC practice; datasheet M01091-1).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic tissue staining; nuclear location annotated (HPA tissue IHC; UniProt) | |
| Staining pattern | General cytoplasmic staining across cell types (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet M01091-1) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | Adipose tissue |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Adipocytes may lack detectable staining (HPA tissue IHC) | |
| Regulation | Broad tissue expression (UniProt) | |
| Isoform / epitope | No listed isoforms; one unprocessed chain (UniProt) |
The catalog antibody’s IHC-P protocol is followed by published PIK3CB staining conditions from gastric cancer, head and neck cancer, and in vivo tumor studies (PMC10861831; PMC12102897; PMC6178240).
| Sample | Paraffin-embedded human colon tissue; fixative not specified (datasheet M01091-1) |
| Fixation | Image fixative and duration unreported (datasheet M01091-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet M01091-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M01091-1) |
| Primary antibody | Rabbit monoclonal (clone 30P53) anti-PIK3CB, 1:50-1:200 (datasheet M01091-1) |
| Primary incubation | Overnight at 4 °C (datasheet M01091-1) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet M01091-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | PIK3CB-positive staining in glandular cells of adrenal gland (HPA tissue IHC: Medium). HPA tissue profile: General cytoplasmic expression. No signal in the no-primary control. |
In paraffin-section IHC, expect broad cellular staining with a predominantly cytoplasmic pattern (HPA tissue IHC: general cytoplasmic expression; Approved reliability, with medium consistency between staining and RNA data). Glandular, respiratory epithelial, hematopoietic and selected neural cells are documented at medium intensity (HPA tissue IHC). PIK3CB can also localize to the nucleus and has no transmembrane segment (UniProt P42338: subcellular location and topology).
| Moderate cytoplasmic staining in breast or appendix glandular cells, bronchial respiratory epithelial cells, or bone marrow hematopoietic cells. | This matches documented medium staining in those cell types and the general cytoplasmic IHC profile (HPA tissue IHC: Medium; general cytoplasmic expression). Compare cells within the section, since ubiquitous expression does not imply equal signal in every cell (UniProt P42338: ubiquitous expression). |
| Signal appears only as extracellular deposits or sharply confined to tissue spaces, without recognizable cellular staining. | That distribution does not match the reported cellular cytoplasmic IHC pattern (HPA tissue IHC: general cytoplasmic expression). Treat it as a possible staining artefact and review tissue morphology and controls (general IHC practice). Nuclear signal alone needs separate evaluation because nuclear localization is reported (UniProt P42338: nucleus). |
| Adipocytes stain strongly while the expected positive cell population is weak or absent. | HPA reports adipocytes as not detected, so this reversal raises concern for cross-reactivity or endogenous detection activity (HPA tissue IHC: adipocytes Not detected; general IHC practice). It is a warning rather than proof: assess a matched negative control and the expected positive cells on the same run. |
| Brown chromogen spreads uniformly across stroma, empty spaces and cells, obscuring cell boundaries. | This is background rather than a readable cellular pattern (general IHC practice). HPA's cytoplasmic profile cannot validate diffuse deposits outside identifiable cells (HPA tissue IHC: general cytoplasmic expression). Judge specificity only after the background is reduced and tissue architecture remains visible. |
| No cellular signal is visible in an otherwise interpretable breast, appendix or bronchus section. | Those tissues contain documented medium-staining cell populations, making an absent result worth checking (HPA tissue IHC: breast and appendix glandular cells; bronchial respiratory epithelial cells, Medium). Verify that the relevant cells are present, then review the antibody and detection workflow (general IHC practice). |
| Cell population and reference tissue | Use the named cell population when judging a section: breast and appendix glandular cells, bronchial respiratory epithelial cells, and bone marrow hematopoietic cells are Medium (HPA tissue IHC). Adipocytes are Not detected, while ovarian stroma cells, skeletal myocytes and lymph-node germinal-center cells are Low (HPA tissue IHC). |
| Subcellular interpretation | A cytoplasmic IHC pattern is the tissue reference (HPA tissue IHC: general cytoplasmic expression). Nuclear staining cannot be dismissed solely by compartment: UniProt lists the nucleus and says PIK3R2 interaction is required for nuclear localization and export (UniProt P42338: subcellular location; subunit). |
| Antibody evidence | The HPA tissue-IHC entry is Approved with medium consistency against RNA data, and CAB031938 is IHC Approved (HPA tissue IHC: reliability; HPA antibodies: CAB031938). Approved supports pattern comparison but does not establish that every antibody or every section will reproduce the same intensity. |
| Topology and processing | PIK3CB has no transmembrane segment, signal peptide or propeptide, and its recorded chain spans residues 1–1070 (UniProt P42338: topology; processing). Interpret a purely extracellular staining pattern cautiously; these annotations do not identify an antibody epitope or establish retrieval sensitivity. |
| IF/ICC Q&A: should nuclear fluorescence be expected? | Yes: HPA ICC-IF reports supported nucleoplasm and nucleoli, with approved additional vesicle and midbody locations (HPA subcellular ICC-IF). This is an IF/ICC observation, so use it as compartment context rather than a paraffin-IHC intensity standard. |
| Situation | Likely cause | Next action |
|---|---|---|
| Expected positive cells show no chromogenic signal. | The sampled area may lack the relevant cell population, or an antibody or detection step may have failed (general IHC practice). | Confirm the target cells in the section and run a documented positive population, such as breast glandular cells or bronchial respiratory epithelial cells (HPA tissue IHC: Medium); then check the IHC-validated antibody and detection controls (general IHC practice). |
| Only adipocytes stain strongly. | This conflicts with the HPA adipocyte reference and may reflect nonspecific binding or endogenous detection activity (HPA tissue IHC: adipocytes Not detected; general IHC practice). | Inspect a matched negative control and an expected positive cell population; address endogenous enzyme activity if the chromogenic detection system requires it (general IHC practice). |
| Acellular or uniformly diffuse brown staining hides the cells. | Excess background or detection deposits can obscure the cellular pattern (general IHC practice). | Check blocking, washes, antibody concentration and chromogen development as general IHC workflow variables; reassess whether cytoplasmic signal is confined to recognizable cells (general IHC practice; HPA tissue IHC: general cytoplasmic expression). |
| The section shows nuclear staining with little cytoplasmic signal. | Nuclear localization is biologically plausible, but it differs from the general tissue-IHC profile (UniProt P42338: nucleus; HPA tissue IHC: general cytoplasmic expression). | Review morphology and controls, then report the observed compartment separately from the expected IHC pattern; do not label nuclear signal artefactual on location alone (general IHC practice; UniProt P42338: PIK3R2-dependent nuclear localization). |
| Weak signal is seen in ovarian stroma, myocytes or germinal-center cells. | Low staining is recorded for these cell populations, so weak signal alone is inconclusive (HPA tissue IHC: Low). | Compare with a documented Medium population in the same run before changing the assay, and score the named cells rather than the whole tissue (HPA tissue IHC: Medium populations; general IHC practice). |
| Two antibodies give different compartment patterns. | Antibody evidence differs by application: CAB031938 is IHC Approved, while HPA042288 and HPA064207 are ICC Supported (HPA antibodies). | Compare results within the relevant application and its controls; use the HPA tissue-IHC profile for paraffin IHC and treat ICC-IF locations as separate evidence (HPA tissue IHC; HPA subcellular ICC-IF; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Medium | Protein (IHC) | HPA → |
| Breast | Glandular cells | Medium | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot PIK3CB staining in paraffin sections by checking retrieval, tissue handling, cell type and compartment before comparing signal intensity.
Both antibodies have paraffin-section IHC images from human tissue; M01091-1 also has mouse and rat brain images and lists IF/ICC use (catalog: IHC captions; M01091-1 applications).
M01091-1 will render with a human colon IHC image; its other captions show human colon cancer and mouse and rat brain, and its listed applications include IF/ICC (catalog: M01091-1 captions and applications). A01091-1 will render with a human intestinal cancer IHC image; another caption shows human lung cancer, and its listed applications include IHC (catalog: A01091-1 captions and applications).
Which to pick: For paraffin-section IHC, choose M01091-1 when a rabbit monoclonal and demonstrated human, mouse and rat tissue staining are useful; its images use EDTA retrieval at pH 8.0 (catalog: M01091-1 clone and IHC captions). Choose A01091-1 for the pictured human intestinal or lung cancer sections; its images use citrate retrieval at pH 6 (catalog: A01091-1 IHC captions). For IF/ICC or cross-species work, M01091-1 lists IF/ICC and human, mouse and rat reactivity, though no IF image is supplied; neither antibody’s IHC captions report the fixative (catalog: M01091-1 applications, reactivity and image lists; both IHC captions).