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- Table of Contents
Plan CDK4 staining in paraffin sections around mainly nuclear, sometimes cytoplasmic signal (HPA tissue IHC). Start with 0.5–1 μg/mL catalog antibody (datasheet: PB9535), then assess staining by cell type with a matched negative control.
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Mainly nuclear, also cytoplasmic in tissue (HPA tissue IHC) | |
| Staining pattern | Variable nuclear and cytoplasmic staining in most tissues (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet PB9535) | |
| Positive control | Bronchus+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep formalin fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Presumed off-target binding can mimic CDK4 staining (HPA tissue IHC) | |
| Regulation | Nuclear accumulation at G1/S transition (UniProt) | |
| Isoform / epitope | Two isoforms; epitope differences are unspecified (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet: PB9535) is followed by published CDK4 staining protocols for ossifying fibroma, soft tissue tumors, and liposarcoma (PMC8760962; PMC10066853; PMC4133208).
| Sample | Paraffin-embedded mouse intestine tissue; fixative not specified (datasheet PB9535) |
| Fixation | Image fixative and duration unreported (datasheet PB9535); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet PB9535); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PB9535) |
| Primary antibody | Rabbit anti-CDK4, 0.5-1μg/ml (datasheet PB9535) |
| Primary incubation | Overnight at 4 °C (datasheet PB9535) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet PB9535) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CDK4-positive staining in ciliated cells (cell body) of bronchus (HPA tissue IHC: High). HPA tissue profile: Mainly nuclear but also cytoplasmic expression at variable levels in most tissues. No signal in the no-primary control. |
CDK4 staining should be mainly nuclear, with variable cytoplasmic signal across many tissues (HPA: tissue IHC, Supported). UniProt also places CDK4 in the cytoplasm, nucleus and nuclear membrane as cyclin D complexes move during G1/S; CDK4 has no transmembrane segment (UniProt P11802: subcellular location and topology). Expect staining in the identified positive cell populations, such as ovarian stroma cells and bronchial ciliated cells, rather than uniformly across every cell in a section (HPA: tissue IHC).
| Nuclear staining, with some cytoplasmic staining, in ovarian stroma cells or bronchial ciliated cells. | This fits the reported compartment pattern and High staining in those cell populations (HPA: tissue IHC). Judge the named cells, since adjacent cell types may have different staining levels. HPA rates the tissue pattern Supported, with medium consistency between staining and RNA data (HPA: reliability description). |
| Signal is concentrated at an unexpected boundary or outside recognizable cells, without convincing nuclear or cytoplasmic staining. | That distribution does not match the mainly nuclear, sometimes cytoplasmic tissue pattern (HPA: tissue IHC). CDK4 has no transmembrane segment, although nuclear membrane localization is reported (UniProt P11802: topology and subcellular location). Check morphology and detection controls before calling boundary staining CDK4. |
| Strong staining occurs in a cell population listed as not detected, such as adipocytes or lung alveolar cells. | Treat this as a specificity question for those specific cells, not as proof that their entire tissue is negative (HPA: adipocytes and alveolar cells, Not detected). Compare a matched negative control and a supported positive cell population; HPA reports that presumed off-target binding was observed and disregarded (HPA: reliability description). |
| Diffuse chromogen covers many structures, including areas without plausible cells, and obscures compartment boundaries. | A diffuse deposit cannot establish the reported nuclear and cytoplasmic pattern (HPA: tissue IHC). General IHC practice is to inspect reagent-only controls and the distribution of background before scoring cells; nonspecific antibody binding or endogenous detection activity are possible explanations, not CDK4-specific findings. |
| No convincing staining appears in bronchial ciliated cells or ovarian stroma cells. | These are reported High cell populations, so absence of signal warrants a run-level check (HPA: bronchus and ovary, High). Confirm that the expected cells are present and assess control performance, antibody use and chromogenic detection. A single negative section does not establish that the listed HPA pattern is wrong. |
| Cell-cycle-associated localization | Non-complexed CDK4 is cytoplasmic; cyclin D-CDK4 accumulates at the nuclear membrane and enters the nucleus around G1/S (UniProt P11802: subcellular location). Thus a mixed nuclear and cytoplasmic pattern can be biologically plausible, but localization alone cannot establish cell-cycle phase. |
| Cell population and tissue context | HPA reports variable expression in most tissues and low RNA tissue specificity (HPA: tissue IHC). Its High, Medium, Low and Not detected entries refer to named cell populations; use those cells when comparing a section with the reference pattern. |
| Antibody evidence | The tissue IHC assessment is Supported, with medium staining-to-RNA consistency and presumed off-target binding disregarded (HPA: reliability description). CAB013116 and CAB069405 are listed as IHC Supported; HPA006024 is listed as ICC Supported, with no IHC status supplied (HPA: antibodies). |
| Protein form and epitope limits | UniProt lists 2 isoforms, a protein kinase domain at residues 6–295, no signal peptide or propeptide, and no glycosylation sites (UniProt P11802). The supplied sources do not identify the antibody epitope or show an isoform-specific staining difference, so these features cannot predict antibody performance. |
| Situation | Likely cause | Next action |
|---|---|---|
| Positive cell populations stain weakly or not at all in IHC. | The expected cells may be absent from the examined field, or the staining run may have failed; HPA lists bronchial ciliated cells and ovarian stroma cells as High (HPA: tissue IHC). | Locate the named cells first. Then check the run's positive control, antibody preparation and chromogenic detection using the established IHC workflow (general IHC practice). Target-specific fixation sensitivity is not reported in the supplied sources. |
| Staining is mainly cytoplasmic, with little convincing nuclear signal. | Cytoplasmic CDK4 is plausible, especially when non-complexed (UniProt P11802: subcellular location), but HPA describes tissue staining as mainly nuclear (HPA: tissue IHC). A cytoplasm-only result therefore needs review. | Inspect nuclear morphology and compare a supported positive population with controls. Record nuclear and cytoplasmic staining separately; avoid assigning a cell-cycle phase from one section. |
| Strong signal appears in HPA-listed negative cells. | Unexpected binding or detection background is possible; HPA notes presumed off-target binding in its tissue assessment (HPA: reliability description). The Not detected calls apply to the listed cells, such as adipocytes, rather than all cells in those tissues (HPA: tissue IHC). | Verify cell identity and compare with a matched negative control and an HPA-listed positive cell population. If the unexpected pattern persists, evaluate specificity before scoring it as CDK4. |
| Background obscures nuclei and cell borders. | Nonspecific reagent binding or endogenous chromogenic detection activity can make localization unreadable (general IHC practice); diffuse deposit is not the reported compartment pattern (HPA: tissue IHC). | Review negative and reagent-only controls, then adjust blocking, washes or detection conditions according to the established assay (general IHC practice). Score only cells whose compartments remain interpretable. |
| A section shows patchy staining across a tissue. | HPA reports variable staining across most tissues and different levels in named cell populations (HPA: tissue IHC). Patchiness alone cannot distinguish biological distribution from an uneven staining run. | Map staining to identifiable cell types, compare several fields and check control uniformity (general IHC practice). Report the cell population and compartment alongside intensity. |
| IF/ICC Q&A: Where should CDK4 fluorescence appear? | HPA supports nucleoplasm and cytosol as main locations, with additional nucleolar and nuclear membrane localization (HPA: subcellular ICC-IF). These are ICC-IF observations, separate from tissue IHC intensity calls. | Compare fluorescence with nuclear and cell outlines when interpreting localization (general IF practice). Use the HPA subcellular pattern for this question; consult the separate IF/ICC guide for assay setup. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — Medium consistency between antibody staining and RNA expression data. Presumed off target binding observed and disregarded.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Bronchus | Ciliated cells (cell body) | High | Protein (IHC) | HPA → |
| Fallopian tube | Ciliated cells (cell body) | High | Protein (IHC) | HPA → |
| Ovary | Ovarian stroma cells | High | Protein (IHC) | HPA → |
| Rectum | Endocrine cells | High | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
| Cerebral cortex | Endothelial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot CDK4 staining in paraffin sections by checking retrieval, controls, compartmental localisation and cell-level scoring before interpreting chromogenic signal.
Anti-CDK4 antibodies have paraffin-section IHC images from human, mouse and rat tissues (catalog IHC image captions), plus IF images from MCF7 and NIH/3T3 cells (catalog IF image captions).
PB9535 has IHC images from mouse and rat intestine and human lung cancer sections (PB9535 image captions); M00159-2 has a human breast carcinoma IHC-P caption, although its card image caption names Pink1 (M00159-2 image captions). M00159-1 has a human stomach cancer IHC image and an MCF7 IF image (M00159-1 image captions); M00159 has a NIH/3T3 IF image and no listed IHC application (M00159 image caption; catalog applications).
Which to pick: For tissue IHC across human, mouse and rat, choose PB9535: its own captions document paraffin sections, EDTA retrieval at pH 8.0 and 1 μg/ml primary antibody; the fixative is unreported (PB9535 image captions). For human IF/ICC, consider rabbit monoclonal M00159-1, which lists both applications and has an MCF7 IF image; rabbit monoclonal M00159 offers an additional NIH/3T3 IF image (catalog applications, host and clone; M00159-1 and M00159 IF image captions). M00159-2 is a mouse monoclonal IHC-P option for human or mouse samples, but its card caption names Pink1, so check the CDK4-specific breast carcinoma caption before relying on that figure (M00159-2 catalog applications, reactivity, host and clone; M00159-2 image captions).